UCO: HPC

High Performance Computing

College of Mathematics and Science
700 E Main St, UCO STEM, Room 116
Edmond, Oklahoma 73034

Please click the login button below to access the On-Demand platform and take full advantage of our high-performance computing resources.

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The UCO College of Mathematics and Science integrates cutting-edge technology into its programs to enhance student learning and research. From advanced labs to state-of-the-art equipment, students can access tools that help them explore complex scientific concepts and solve real-world problems. Whether through computational simulations, laboratory data analysis or tech-driven field research, the college ensures that students have the technical skills needed for modern scientific careers, fostering innovation and hands-on experience in classroom and research environments.

Buddy Supercomputer

Buddy, funded by the National Science Foundation, is a 168-node supercomputer for research and education. Research projects include particle transport, micromixing, stochastic modeling, ecological modeling, bio-informatics and the spread of disease.

Access to Buddy

Access is available for faculty or students working on a project at UCO or with a UCO faculty member. To request access, email the HPC Center.

With access, Buddy can be accessed online. We use the Open OnDemand software, which makes it easy to set up jobs and use interactive graphical user interfaces.

BuddyGPT

BuddyGPT is an LLM service that provides UCO researchers with access to open source AI models such as Qwen3-Coder-Next and GPT-OSS. It is hosted entirely on UCO's on-premises resources, ensuring that chats, documents, and models are not shared between users nor used for training.

Free for the UCO community, BuddyGPT assists with everyday academic tasks — allowing you to draft essays, refine prose, debug code, summarize papers, and solve complex problems using open models running right on campus.

To request access, reach out to hpc@uco.edu with the subject line "BuddyGPT Access Request".

With access, BuddyGPT can be accessed online. For full details on setup and usage, visit the documentation page.

Hardware used in Buddy 2.5

Buddy 2.5 Compute Nodes:

Model Name: IBM DX360 M4
Total Quantity: 168
CPU: 2 x Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz
Networking: InfiniBand MT27500 [ConnectX-3] @ 40GB/s

Available for use:

General Queue
Quantity: 115
RAM: 64GB

High-mem Queue
Quantity: 8
RAM: 128GB

Storage:

Storage Server Model: Advanced Clustering M50CYP2SBSTD
Capacity: 108TB of shared home storage (24TB used, 79TB available)

Software used in Buddy 2.5

4ti2
- A software package for algebraic, geometric and combinatorial problems on linear spaces
- https://4ti2.github.io/
- Versions:
  * 1.6.10-GCC-13.2.0
ACTC
- ACTC converts independent triangles into triangle strips or fans.
- https://sourceforge.net/projects/actc
- Versions:
  - 1.1-GCCcore-11.3.0
  * 1.1-GCCcore-12.3.0
ANSYS
- ANSYS simulation software enables organizations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater.
- https://www.ansys.com
- Versions:
  - 2023R1
  * 2024R1
ATK
- ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
- https://developer.gnome.org/atk/
- Versions:
  - 2.36.0-GCCcore-11.2.0
  - 2.38.0-GCCcore-11.3.0
  - 2.38.0-GCCcore-12.2.0
  - 2.38.0-GCCcore-12.3.0
  - 2.38.0-GCCcore-13.2.0
  * 2.38.0-GCCcore-13.3.0
Abseil
- Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
- https://abseil.io/
- Versions:
  - 20230125.2-GCCcore-12.2.0
  - 20230125.3-GCCcore-12.3.0
  - 20240116.1-GCCcore-13.2.0
  * 20240722.0-GCCcore-13.3.0
Armadillo
- Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
- https://arma.sourceforge.net/
- Versions:
  - 12.6.2-foss-2023a
  - 12.8.0-foss-2023b
  * 14.0.3-foss-2024a
Arrow
- Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
- https://arrow.apache.org
- Versions:
  - 8.0.0-foss-2022a
  - 14.0.1-gfbf-2023a
  * 17.0.0-gfbf-2024a
Autoconf
- Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
- https://www.gnu.org/software/autoconf/
- Versions:
  - 2.69-GCCcore-9.3.0
  - 2.69-GCCcore-10.2.0
  - 2.71-GCCcore-10.3.0
  - 2.71-GCCcore-11.2.0
  - 2.71-GCCcore-11.3.0
  - 2.71-GCCcore-12.2.0
  - 2.71-GCCcore-12.3.0
  - 2.71-GCCcore-13.2.0
  - 2.71
  - 2.72-GCCcore-13.3.0
  * 2.72-GCCcore-14.2.0
Automake
- Automake: GNU Standards-compliant Makefile generator
- https://www.gnu.org/software/automake/automake.html
- Versions:
  - 1.16.1-GCCcore-9.3.0
  - 1.16.2-GCCcore-10.2.0
  - 1.16.3-GCCcore-10.3.0
  - 1.16.4-GCCcore-11.2.0
  - 1.16.5-GCCcore-11.3.0
  - 1.16.5-GCCcore-12.2.0
  - 1.16.5-GCCcore-12.3.0
  - 1.16.5-GCCcore-13.2.0
  - 1.16.5-GCCcore-13.3.0
  - 1.16.5
  * 1.17-GCCcore-14.2.0
Autotools
- This bundle collect the standard GNU build tools: Autoconf, Automake and libtool
- https://autotools.io
- Versions:
  - 20180311-GCCcore-9.3.0
  - 20200321-GCCcore-10.2.0
  - 20210128-GCCcore-10.3.0
  - 20210726-GCCcore-11.2.0
  - 20220317-GCCcore-11.3.0
  - 20220317-GCCcore-12.2.0
  - 20220317-GCCcore-12.3.0
  - 20220317-GCCcore-13.2.0
  - 20220317
  - 20231222-GCCcore-13.3.0
  * 20240712-GCCcore-14.2.0
BEDTools
- BEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.
- https://bedtools.readthedocs.io/
- Versions:
  - 2.31.0-GCC-12.3.0
  * 2.31.1-GCC-13.2.0
BLAST+
- Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
- https://blast.ncbi.nlm.nih.gov/
- Versions:
  - 2.13.0-gompi-2022a
  * 2.14.1-gompi-2023a
BLIS
- BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
- https://github.com/flame/blis/
- Versions:
  - 0.8.1-GCC-10.3.0
  - 0.8.1-GCC-11.2.0
  - 0.9.0-GCC-11.3.0
  - 0.9.0-GCC-12.2.0
  - 0.9.0-GCC-12.3.0
  - 0.9.0-GCC-13.2.0
  * 1.0-GCC-13.3.0
BRiAl
- BRiAl is the legacy version of PolyBoRi maintained by sagemath developers.
- https://github.com/BRiAl/BRiAl
- Versions:
  * 1.2.12-GCC-13.2.0
BamTools
- BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
- https://github.com/pezmaster31/bamtools
- Versions:
  - 2.5.2-GCC-12.3.0
  * 2.5.2-GCC-13.2.0
Bazel
- Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.
- https://bazel.io/
- Versions:
  - 5.1.1-GCCcore-11.3.0
  - 6.1.0-GCCcore-12.3.0
  * 7.4.1-GCCcore-13.3.0
BeautifulSoup
- Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.
- https://www.crummy.com/software/BeautifulSoup
- Versions:
  - 4.10.0-GCCcore-11.3.0
  - 4.12.2-GCCcore-13.2.0
  * 4.12.3-GCCcore-13.3.0
Biopython
- Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.
- https://www.biopython.org
- Versions:
  - 1.83-foss-2023a
  - 1.84-foss-2023b
  * 1.84-foss-2024a
Bison
- Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
- https://www.gnu.org/software/bison
- Versions:
  - 3.0.5
  - 3.3.2
  - 3.5.3-GCCcore-9.3.0
  - 3.7.1-GCCcore-10.2.0
  - 3.7.6-GCCcore-10.3.0
  - 3.7.6-GCCcore-11.2.0
  - 3.8.2-GCCcore-11.3.0
  - 3.8.2-GCCcore-12.2.0
  - 3.8.2-GCCcore-12.3.0
  - 3.8.2-GCCcore-13.2.0
  - 3.8.2-GCCcore-13.3.0
  - 3.8.2-GCCcore-14.1.0
  - 3.8.2-GCCcore-14.2.0
  - 3.8.2-GCCcore-14.3.0
  - 3.8.2-GCCcore-15.1.0
  * 3.8.2
Blender
- Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation.
- https://www.blender.org/
- Versions:
  * 4.0.1-linux-x86_64-CUDA-12.1.1
Block
- Block implements the density matrix renormalization group (DMRG) algorithm for quantum chemistry.
- https://sanshar.github.io/Block/
- Versions:
  - 1.5.3-20200525-foss-2022b
  * 1.5.3-20200525-foss-2023a
Boost
- Boost provides free peer-reviewed portable C++ source libraries.
- https://www.boost.org/
- Versions:
  - 1.79.0-GCC-11.2.0
  - 1.79.0-GCC-11.3.0
  - 1.82.0-GCC-12.3.0
  - 1.83.0-GCC-13.2.0
  * 1.85.0-GCC-13.3.0
Boost.MPI
- Boost provides free peer-reviewed portable C++ source libraries.
- https://www.boost.org/
- Versions:
  - 1.81.0-gompi-2022b
  * 1.82.0-gompi-2023a
Boost.Python
- Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.
- https://boostorg.github.io/python
- Versions:
  * 1.83.0-GCC-13.2.0
Bottleneck
- Fast NumPy array functions written in C
- https://kwgoodman.github.io/bottleneck-doc
- Versions:
  * 1.3.7-foss-2022a
Bowtie2
- Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
- https://bowtie-bio.sourceforge.net/bowtie2/index.shtml
- Versions:
  - 2.4.5-GCC-11.3.0
  * 2.5.1-GCC-12.3.0
Brotli
- Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
- https://github.com/google/brotli
- Versions:
  - 1.0.9-GCCcore-10.2.0
  - 1.0.9-GCCcore-10.3.0
  - 1.0.9-GCCcore-11.2.0
  - 1.0.9-GCCcore-11.3.0
  - 1.0.9-GCCcore-12.2.0
  - 1.0.9-GCCcore-12.3.0
  - 1.1.0-GCCcore-13.2.0
  - 1.1.0-GCCcore-13.3.0
  * 1.1.0-GCCcore-14.2.0
Brotli-python
- Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
- https://github.com/google/brotli
- Versions:
  - 1.0.9-GCCcore-11.3.0
  * 1.0.9-GCCcore-12.3.0
Brunsli
- Brunsli is a lossless JPEG repacking library.
- https://github.com/google/brunsli/
- Versions:
  - 0.1-GCCcore-12.3.0
  - 0.1-GCCcore-13.2.0
  * 0.1-GCCcore-13.3.0
CESM-deps
- CESM is a fully-coupled, community, global climate model that provides state-of-the-art computer simulations of the Earth's past, present, and future climate states.
- https://www.cesm.ucar.edu/models/cesm2/
- Versions:
  * 2-foss-2023a
CFITSIO
- CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
- https://heasarc.gsfc.nasa.gov/fitsio/
- Versions:
  - 4.3.0-GCCcore-12.3.0
  - 4.3.1-GCCcore-13.2.0
  * 4.4.1-GCCcore-13.3.0
CGAL
- The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
- https://www.cgal.org/
- Versions:
  - 5.6-GCCcore-12.3.0
  - 5.6.1-GCCcore-13.2.0
  * 5.6.1-GCCcore-13.3.0
CMake
- CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
- https://www.cmake.org
- Versions:
  - 3.18.4-GCCcore-10.2.0
  - 3.20.1-GCCcore-10.3.0
  - 3.21.1-GCCcore-11.2.0
  - 3.22.1-GCCcore-11.2.0
  - 3.23.1-GCCcore-11.3.0
  - 3.24.3-GCCcore-11.3.0
  - 3.24.3-GCCcore-12.2.0
  - 3.26.3-GCCcore-12.3.0
  - 3.27.6-GCCcore-13.2.0
  - 3.29.3-GCCcore-13.3.0
  * 3.31.3-GCCcore-14.2.0
COMSOL
- COMSOL Multiphysics is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems.
- https://www.comsol.com
- Versions:
  * 6.3.0.335
CPPE
- CPPE is an open-source, light-weight C++ and Python library for Polarizable Embedding (PE)1,2 calculations. It provides an easy-to-use API to implement PE for ground-state self-consistent field (SCF) calculations and post-SCF methods. A convenient Python interface is also available.
- https://github.com/maxscheurer/cppe
- Versions:
  - 0.3.1-GCC-12.2.0
  * 0.3.1-GCC-12.3.0
CUDA
- CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
- https://developer.nvidia.com/cuda-toolkit
- Versions:
  - 11.1.1-GCC-10.2.0
  - 11.4.1
  - 12.0.0
  - 12.1.1
  - 12.6.0
  * 12.8.0
CUDAcore
- CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
- https://developer.nvidia.com/cuda-toolkit
- Versions:
  * 11.1.1
CUDD
- The CUDD package is a package written in C for the manipulation of decision diagrams. It supports binary decision diagrams (BDDs), algebraic decision diagrams (ADDs), and Zero-Suppressed BDDs (ZDDs).
- https://github.com/ivmai/cudd
- Versions:
  * 3.0.0-GCC-13.2.0
CUnit
- Automated testing framework for C.
- https://sourceforge.net/projects/cunit/
- Versions:
  - 2.1-3-GCCcore-11.2.0
  * 2.1-3-GCCcore-12.3.0
CVXOPT
- CVXOPT is a free software package for convex optimization based on the Python programming language. Its main purpose is to make the development of software for convex optimization applications straightforward by building on Python's extensive standard library and on the strengths of Python as a high-level programming language.
- https://cvxopt.org
- Versions:
  - 1.3.1-foss-2022a
  * 1.3.2-foss-2023a
Cartopy
- Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy.
- https://scitools.org.uk/cartopy/docs/latest/
- Versions:
  - 0.20.3-foss-2021b
  * 0.22.0-foss-2023a
Catch2
- A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
- https://github.com/catchorg/Catch2
- Versions:
  - 2.13.9-GCCcore-12.2.0
  - 2.13.9-GCCcore-12.3.0
  - 2.13.9-GCCcore-13.2.0
  * 2.13.10-GCCcore-13.3.0
CheMPS2
- CheMPS2 is a scientific library which contains a spin-adapted implementation of the density matrix renormalization group (DMRG) for ab initio quantum chemistry.
- https://github.com/SebWouters/CheMPS2
- Versions:
  - 1.8.12-foss-2022b
  * 1.8.12-foss-2023a
Check
- Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.
- https://libcheck.github.io/check/
- Versions:
  - 0.15.2-GCCcore-10.2.0
  - 0.15.2-GCCcore-13.2.0
  * 0.15.2-GCCcore-14.2.0
Clang
- C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.
- https://clang.llvm.org/
- Versions:
  - 16.0.6-GCCcore-12.3.0
  - 17.0.6-GCCcore-13.2.0
  - 18.1.8-GCCcore-13.3.0-CUDA-12.6.0
  * 18.1.8-GCCcore-13.3.0
CoCoALib
- CoCoALib is a free GPL3 C++ library for doing Computations in Commutative Algebra.
- https://cocoa.dima.unige.it/cocoa/cocoalib/
- Versions:
  * 0.99850-GCC-13.2.0
Cython
- Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
- https://cython.org/
- Versions:
  - 3.0.7-GCCcore-12.3.0
  - 3.0.8-GCCcore-12.3.0
  - 3.0.10-GCCcore-13.2.0
  * 3.0.10-GCCcore-13.3.0
DB
- Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.
- https://www.oracle.com/technetwork/products/berkeleydb
- Versions:
  - 18.1.32-GCCcore-9.3.0
  - 18.1.40-GCCcore-10.2.0
  - 18.1.40-GCCcore-10.3.0
  - 18.1.40-GCCcore-11.2.0
  - 18.1.40-GCCcore-11.3.0
  - 18.1.40-GCCcore-12.2.0
  - 18.1.40-GCCcore-12.3.0
  * 18.1.40-GCCcore-13.3.0
DBus
- D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
- https://dbus.freedesktop.org/
- Versions:
  - 1.13.18-GCCcore-11.2.0
  - 1.14.0-GCCcore-11.3.0
  - 1.15.2-GCCcore-12.2.0
  - 1.15.4-GCCcore-12.3.0
  - 1.15.8-GCCcore-13.2.0
  * 1.15.8-GCCcore-13.3.0
DendroPy
- A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
- https://dendropy.org/
- Versions:
  - 4.5.2-GCCcore-11.3.0
  * 4.6.1-GCCcore-12.3.0
Dice
- Dice contains code for performing SHCI, VMC, GFMC, DMC, FCIQMC, stochastic MRCI and SC-NEVPT2, and AFQMC calculations with a focus on ab initio systems.
- https://github.com/sanshar/Dice
- Versions:
  - 20240101-foss-2022b
  * 20240702-foss-2023a
Doxygen
- Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
- https://www.doxygen.nl
- Versions:
  - 1.8.20-GCCcore-10.2.0
  - 1.9.1-GCCcore-10.3.0
  - 1.9.1-GCCcore-11.2.0
  - 1.9.4-GCCcore-11.3.0
  - 1.9.5-GCCcore-12.2.0
  - 1.9.7-GCCcore-12.3.0
  - 1.9.8-GCCcore-13.2.0
  - 1.11.0-GCCcore-13.3.0
  * 1.14.0-GCCcore-14.2.0
E-ANTIC
- E-ANTIC is a C/C++ library to deal with real embedded number fields built on top of ANTIC (https://github.com/wbhart/antic). Its aim is to have as fast as possible exact arithmetic operations and comparisons.
- https://github.com/flatsurf/e-antic
- Versions:
  * 2.0.2-gfbf-2023b
ECL
- ECL (Embeddable Common-Lisp) is an interpreter of the Common-Lisp language as described in the X3J13 Ansi specification, featuring CLOS (Common-Lisp Object System), conditions, loops, etc, plus a translator to C, which can produce standalone executables.
- https://ecl.common-lisp.dev/
- Versions:
  * 24.5.10-GCCcore-13.2.0
ELPA
- Eigenvalue SoLvers for Petaflop-Applications.
- https://elpa.mpcdf.mpg.de/
- Versions:
  - 2021.11.001-foss-2022a
  - 2023.05.001-foss-2023a
  - 2023.05.001-intel-2023a
  - 2023.11.001-foss-2023b
  - 2024.05.001-foss-2024a
  * 2024.05.001-intel-2024a
ESMF
- The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.
- https://www.earthsystemcog.org/projects/esmf/
- Versions:
  * 8.6.0-foss-2023a
EasyBuild
- EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.
- https://easybuilders.github.io/easybuild
- Versions:
  - 4.9.2
  - 4.9.4
  - 5.0.0
  * 5.1.0
Eigen
- Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
- https://eigen.tuxfamily.org
- Versions:
  - 3.3.9-GCCcore-10.3.0
  - 3.3.9-GCCcore-11.2.0
  - 3.4.0-GCCcore-11.2.0
  - 3.4.0-GCCcore-11.3.0
  - 3.4.0-GCCcore-12.2.0
  - 3.4.0-GCCcore-12.3.0
  - 3.4.0-GCCcore-13.2.0
  * 3.4.0-GCCcore-13.3.0
Emacs
- GNU Emacs is an extensible, customizable text editor--and more. At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language with extensions to support text editing.
- https://www.gnu.org/software/emacs/
- Versions:
  * 28.2-GCCcore-12.2.0
FFLAS-FFPACK
- Finite Field Linear Algebra Subroutines / Package
- https://linbox-team.github.io/fflas-ffpack/
- Versions:
  * 2.5.0-gfbf-2023b
FFTW
- FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
- https://www.fftw.org
- Versions:
  - 3.3.8-gompi-2020a
  - 3.3.8-gompi-2020b
  - 3.3.8-gompic-2020b
  - 3.3.9-gompi-2021a
  - 3.3.10-GCC-11.3.0
  - 3.3.10-GCC-12.2.0
  - 3.3.10-GCC-12.3.0
  - 3.3.10-GCC-13.2.0
  - 3.3.10-GCC-13.3.0
  * 3.3.10-gompi-2021b
FFTW.MPI
- FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
- https://www.fftw.org
- Versions:
  - 3.3.10-gompi-2022a
  - 3.3.10-gompi-2022b
  - 3.3.10-gompi-2023a
  - 3.3.10-gompi-2023b
  * 3.3.10-gompi-2024a
FFmpeg
- A complete, cross-platform solution to record, convert and stream audio and video.
- https://www.ffmpeg.org/
- Versions:
  - 4.4.2-GCCcore-11.3.0
  - 5.1.2-GCCcore-12.2.0
  - 6.0-GCCcore-12.3.0
  - 6.0-GCCcore-13.2.0
  * 7.0.2-GCCcore-13.3.0
FIRESTARTER
- FIRESTARTER: A Processor Stress Test Utility. FIRESTARTER maximizes the energy consumption of 64-Bit x86 processors by generating heavy load on the execution units as well as transferring data between the cores and multiple levels of the memory hierarchy.
- https://github.com/tud-zih-energy/FIRESTARTER/
- Versions:
  * 2.0-gcccuda-2020b
FLAC
- FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
- https://xiph.org/flac/
- Versions:
  - 1.3.3-GCCcore-10.3.0
  - 1.3.3-GCCcore-11.2.0
  - 1.3.4-GCCcore-11.3.0
  - 1.4.2-GCCcore-12.3.0
  * 1.4.3-GCCcore-13.3.0
FLINT
- FLINT (Fast Library for Number Theory) is a C library in support of computations in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides various low-level routines for fast arithmetic. FLINT is extensively documented and tested.
- https://www.flintlib.org/
- Versions:
  - 2.7.1-GCC-10.3.0
  - 3.1.1-gfbf-2023b
  * 3.1.2-gfbf-2024a
FLTK
- FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
- https://www.fltk.org
- Versions:
  - 1.3.7-GCCcore-11.2.0
  - 1.3.8-GCCcore-11.3.0
  - 1.3.8-GCCcore-12.3.0
  * 1.3.9-GCCcore-13.2.0
FastQC
- FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.
- https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
- Versions:
  * 0.12.1-Java-11
FastTree
- FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory.
- http://www.microbesonline.org/fasttree/
- Versions:
  - 2.1.11-GCCcore-11.3.0
  * 2.1.11-GCCcore-12.3.0
Fiona
- Fiona is designed to be simple and dependable. It focuses on reading and writing data in standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries, mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data using multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS packages such as pyproj, Rtree, and Shapely.
- https://github.com/Toblerity/Fiona
- Versions:
  - 1.8.21-foss-2021b
  * 1.9.5-foss-2023a
FlexiBLAS
- FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
- https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release
- Versions:
  - 3.0.4-GCC-10.3.0
  - 3.0.4-GCC-11.2.0
  - 3.2.0-GCC-11.3.0
  - 3.2.1-GCC-12.2.0
  - 3.3.1-GCC-12.3.0
  - 3.3.1-GCC-13.2.0
  * 3.4.4-GCC-13.3.0
FreeXL
- FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet.
- https://www.gaia-gis.it/fossil/freexl/index
- Versions:
  - 1.0.6-GCCcore-11.2.0
  * 2.0.0-GCCcore-12.3.0
FriBidi
- The Free Implementation of the Unicode Bidirectional Algorithm.
- https://github.com/fribidi/fribidi
- Versions:
  - 1.0.10-GCCcore-10.3.0
  - 1.0.10-GCCcore-11.2.0
  - 1.0.12-GCCcore-11.3.0
  - 1.0.12-GCCcore-12.2.0
  - 1.0.12-GCCcore-12.3.0
  - 1.0.13-GCCcore-13.2.0
  * 1.0.15-GCCcore-13.3.0
GCC
- The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
- https://gcc.gnu.org/
- Versions:
  - 9.3.0
  - 10.2.0
  - 10.3.0
  - 11.2.0
  - 11.3.0
  - 12.2.0
  - 12.3.0
  - 13.2.0
  - 13.3.0
  - 14.1.0
  * 14.2.0
GCCcore
- The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
- https://gcc.gnu.org/
- Versions:
  - 9.3.0
  - 10.2.0
  - 10.3.0
  - 11.2.0
  - 11.3.0
  - 12.2.0
  - 12.3.0
  - 13.2.0
  - 13.3.0
  - 14.1.0
  - 14.2.0
  - 14.3.0
  * 15.1.0
GConf
- GConf is a system for storing application preferences. It is intended for user preferences; not configuration of something like Apache, or arbitrary data storage.
- https://gitlab.gnome.org/iainl/gconf
- Versions:
  * 3.2.6-GCCcore-11.2.0
GDAL
- GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
- https://www.gdal.org
- Versions:
  - 3.3.0-foss-2021a
  - 3.3.2-foss-2021b
  - 3.5.0-foss-2022a
  - 3.7.1-foss-2023a
  - 3.9.0-foss-2023b
  * 3.10.0-foss-2024a
GDRCopy
- A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
- https://github.com/NVIDIA/gdrcopy
- Versions:
  - 2.1-GCCcore-10.2.0-CUDA-11.1.1
  - 2.3-GCCcore-11.2.0
  - 2.3-GCCcore-12.2.0
  - 2.3.1-GCCcore-12.3.0
  * 2.4.4-GCCcore-14.2.0
GEOS
- GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
- https://trac.osgeo.org/geos
- Versions:
  - 3.9.1-GCC-10.3.0
  - 3.9.1-GCC-11.2.0
  - 3.10.3-GCC-11.3.0
  - 3.12.0-GCC-12.3.0
  - 3.12.1-GCC-13.2.0
  * 3.12.2-GCC-13.3.0
GL2PS
- GL2PS: an OpenGL to PostScript printing library
- https://www.geuz.org/gl2ps/
- Versions:
  - 1.4.2-GCCcore-11.2.0
  * 1.4.2-GCCcore-12.3.0
GLPK
- The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
- https://www.gnu.org/software/glpk/
- Versions:
  - 5.0-GCCcore-10.3.0
  - 5.0-GCCcore-11.2.0
  - 5.0-GCCcore-11.3.0
  - 5.0-GCCcore-12.3.0
  - 5.0-GCCcore-13.2.0
  * 5.0-GCCcore-13.3.0
GLib
- GLib is one of the base libraries of the GTK+ project
- https://www.gtk.org/
- Versions:
  - 2.68.2-GCCcore-10.3.0
  - 2.69.1-GCCcore-11.2.0
  - 2.72.1-GCCcore-11.3.0
  - 2.75.0-GCCcore-12.2.0
  - 2.77.1-GCCcore-12.3.0
  - 2.78.1-GCCcore-13.2.0
  - 2.80.4-GCCcore-13.3.0
  * 2.85.1-GCCcore-14.2.0
GMP
- GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
- https://gmplib.org/
- Versions:
  - 6.2.0-GCCcore-9.3.0
  - 6.2.0-GCCcore-10.2.0
  - 6.2.1-GCCcore-10.3.0
  - 6.2.1-GCCcore-11.2.0
  - 6.2.1-GCCcore-11.3.0
  - 6.2.1-GCCcore-12.2.0
  - 6.2.1-GCCcore-12.3.0
  - 6.3.0-GCCcore-13.2.0
  - 6.3.0-GCCcore-13.3.0
  * 6.3.0-GCCcore-14.2.0
GMP-ECM
- Yet another implementation of the Elliptic Curve Method.
- https://gitlab.inria.fr/zimmerma/ecm
- Versions:
  * 7.0.5-GCCcore-13.2.0
GObject-Introspection
- GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
- https://gi.readthedocs.io/en/latest/
- Versions:
  - 1.68.0-GCCcore-10.3.0
  - 1.68.0-GCCcore-11.2.0
  - 1.72.0-GCCcore-11.3.0
  - 1.74.0-GCCcore-12.2.0
  - 1.76.1-GCCcore-12.3.0
  - 1.78.1-GCCcore-13.2.0
  * 1.80.1-GCCcore-13.3.0
GRASS
- The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization
- https://grass.osgeo.org
- Versions:
  - 8.2.0-foss-2021b
  * 8.4.0-foss-2023a
GROMACS
- GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
- https://www.gromacs.org
- Versions:
  - 2024.1-foss-2023b
  * 2024.4-foss-2023b
GSL
- The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
- https://www.gnu.org/software/gsl/
- Versions:
  - 2.7-GCC-10.3.0
  - 2.7-GCC-11.2.0
  - 2.7-GCC-11.3.0
  - 2.7-GCC-12.3.0
  - 2.7-GCC-13.2.0
  * 2.8-GCC-13.3.0
GST-plugins-base
- GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
- https://gstreamer.freedesktop.org/
- Versions:
  - 1.18.5-GCC-11.2.0
  - 1.22.5-GCC-12.3.0
  * 1.24.8-GCC-13.3.0
GStreamer
- GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
- https://gstreamer.freedesktop.org/
- Versions:
  - 1.18.5-GCC-11.2.0
  - 1.22.5-GCC-12.3.0
  * 1.24.8-GCC-13.3.0
GTK2
- The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.
- https://www.gtk.org
- Versions:
  * 2.24.33-GCCcore-11.3.0
GTK3
- GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
- https://developer.gnome.org/gtk3/stable/
- Versions:
  - 3.24.31-GCCcore-11.2.0
  - 3.24.35-GCCcore-12.2.0
  - 3.24.37-GCCcore-12.3.0
  - 3.24.39-GCCcore-13.2.0
  * 3.24.42-GCCcore-13.3.0
Gdk-Pixbuf
- The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
- https://docs.gtk.org/gdk-pixbuf/
- Versions:
  - 2.42.6-GCCcore-11.2.0
  - 2.42.8-GCCcore-11.3.0
  - 2.42.10-GCCcore-12.2.0
  - 2.42.10-GCCcore-12.3.0
  - 2.42.10-GCCcore-13.2.0
  * 2.42.11-GCCcore-13.3.0
Ghostscript
- Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
- https://ghostscript.com
- Versions:
  - 9.54.0-GCCcore-10.3.0
  - 9.54.0-GCCcore-11.2.0
  - 9.56.1-GCCcore-11.3.0
  - 10.01.2-GCCcore-12.3.0
  - 10.02.1-GCCcore-13.2.0
  * 10.03.1-GCCcore-13.3.0
Givaro
- C++ library for arithmetic and algebraic computations
- https://github.com/linbox-team/givaro
- Versions:
  * 4.2.0-GCCcore-13.2.0
GnuTLS
- GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability.
- https://www.gnutls.org
- Versions:
  - 3.7.3-GCCcore-11.2.0
  * 3.7.8-GCCcore-12.3.0
Go
- Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.
- https://www.golang.org
- Versions:
  - 1.22.1
  - 1.22.4
  * 1.23.6
Graphene
- Graphene is a thin layer of types for graphic libraries
- https://ebassi.github.io/graphene/
- Versions:
  - 1.10.8-GCCcore-12.3.0
  * 1.10.8-GCCcore-13.3.0
GraphicsMagick
- GraphicsMagick is the swiss army knife of image processing.
- http://www.graphicsmagick.org/
- Versions:
  - 1.3.36-GCCcore-11.2.0
  * 1.3.45-GCCcore-13.3.0
Guile
- Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.
- https://www.gnu.org/software/guile/
- Versions:
  - 1.8.8-GCCcore-9.3.0
  - 3.0.7-GCCcore-11.2.0
  - 3.0.9-GCCcore-12.3.0
  * 3.0.10-GCCcore-13.3.0
Gurobi
- The Gurobi Optimizer is a state-of-the-art solver for mathematical programming. The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms.
- https://www.gurobi.com
- Versions:
  * 11.0.0-GCCcore-12.3.0
HDF
- HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
- https://support.hdfgroup.org/products/hdf4/
- Versions:
  - 4.2.15-GCCcore-10.3.0
  - 4.2.15-GCCcore-11.2.0
  - 4.2.15-GCCcore-11.3.0
  - 4.2.16-2-GCCcore-12.3.0
  - 4.2.16-2-GCCcore-13.2.0
  * 4.3.0-GCCcore-13.3.0
HDF5
- HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
- https://portal.hdfgroup.org/display/support
- Versions:
  - 1.10.7-gompi-2021a
  - 1.12.1-gompi-2021b
  - 1.12.2-gompi-2022a
  - 1.14.0-gompi-2022b
  - 1.14.0-gompi-2023a
  - 1.14.0-iimpi-2023a
  - 1.14.3-gompi-2023b
  - 1.14.5-gompi-2024a
  * 1.14.5-iimpi-2024a
HMMER
- HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
- http://hmmer.org/
- Versions:
  - 3.3.2-gompi-2022a
  - 3.4-gompi-2023a
  * 3.4-gompi-2024a
HPL
- HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.
- https://www.netlib.org/benchmark/hpl/
- Versions:
  - 2.3-foss-2023b
  - 2.3-foss-2024a
  * 2.3-intel-2024a
HTSlib
- A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
- https://www.htslib.org/
- Versions:
  - 1.15.1-GCC-11.3.0
  - 1.18-GCC-12.3.0
  * 1.21-GCC-13.3.0
HarfBuzz
- HarfBuzz is an OpenType text shaping engine.
- https://www.freedesktop.org/wiki/Software/HarfBuzz
- Versions:
  - 2.8.1-GCCcore-10.3.0
  - 2.8.2-GCCcore-11.2.0
  - 4.2.1-GCCcore-11.3.0
  - 5.3.1-GCCcore-12.2.0
  - 5.3.1-GCCcore-12.3.0
  - 8.2.2-GCCcore-13.2.0
  * 9.0.0-GCCcore-13.3.0
ICU
- ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
- https://icu.unicode.org
- Versions:
  - 69.1-GCCcore-10.3.0
  - 69.1-GCCcore-11.2.0
  - 71.1-GCCcore-11.3.0
  - 72.1-GCCcore-12.2.0
  - 73.2-GCCcore-12.3.0
  - 74.1-GCCcore-13.2.0
  - 75.1-GCCcore-13.3.0
  * 76.1-GCCcore-14.2.0
IJulia
- Julia kernel for Jupyter
- https://github.com/JuliaLang/IJulia.jl
- Versions:
  * 1.24.2-Julia-1.10.3
IML
- IML is a free library of C source code which implements algorithms for computing exact solutions to dense systems of linear equations over the integers.
- https://cs.uwaterloo.ca/~astorjoh/iml.html
- Versions:
  * 1.0.5-gfbf-2023b
IPython
- IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
- https://ipython.org/index.html
- Versions:
  - 7.25.0-GCCcore-10.3.0
  - 8.5.0-GCCcore-11.3.0
  - 8.14.0-GCCcore-12.3.0
  - 8.17.2-GCCcore-13.2.0
  * 8.28.0-GCCcore-13.3.0
IRkernel
- The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network.
- https://irkernel.github.io
- Versions:
  - 1.3.2-foss-2022a-R-4.2.1
  * 1.3.2-gfbf-2023a-R-4.3.2
ISA-L
- Intelligent Storage Acceleration Library
- https://github.com/intel/isa-l
- Versions:
  - 2.30.0-GCCcore-11.3.0
  - 2.30.0-GCCcore-12.3.0
  - 2.31.0-GCCcore-13.2.0
  * 2.31.0-GCCcore-13.3.0
ImageJ
- Image Processing and Analysis in Java
- https://imagej.nih.gov/ij
- Versions:
  * 1.54m-Java-11
ImageMagick
- ImageMagick is a software suite to create, edit, compose, or convert bitmap images
- https://www.imagemagick.org/
- Versions:
  - 7.0.11-14-GCCcore-10.3.0
  - 7.1.0-4-GCCcore-11.2.0
  - 7.1.0-37-GCCcore-11.3.0
  - 7.1.1-15-GCCcore-12.3.0
  * 7.1.1-38-GCCcore-13.3.0
Imath
- Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
- https://imath.readthedocs.io/en/latest/
- Versions:
  - 3.1.5-GCCcore-11.3.0
  - 3.1.7-GCCcore-12.3.0
  - 3.1.9-GCCcore-13.2.0
  * 3.1.11-GCCcore-13.3.0
JUnit
- A programmer-oriented testing framework for Java.
- http://sourceforge.net/projects/junit
- Versions:
  * 4.12-Java-1.8
Jansson
- Jansson is a C library for encoding, decoding and manipulating JSON data. Its main features and design principles are: * Simple and intuitive API and data model * Comprehensive documentation * No dependencies on other libraries * Full Unicode support (UTF-8) * Extensive test suite
- https://www.digip.org/jansson/
- Versions:
  - 2.13.1-GCC-11.2.0
  * 2.14-GCC-12.3.0
JasPer
- The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
- https://www.ece.uvic.ca/~frodo/jasper/
- Versions:
  - 2.0.28-GCCcore-10.3.0
  - 2.0.33-GCCcore-11.2.0
  - 2.0.33-GCCcore-11.3.0
  - 4.0.0-GCCcore-12.2.0
  - 4.0.0-GCCcore-12.3.0
  - 4.0.0-GCCcore-13.2.0
  * 4.2.4-GCCcore-13.3.0
Java
- Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
- https://openjdk.org
- Versions:
  - 1.8.0_292-OpenJDK
  - 1.8.0_311
  - 11.0.20
  - 17.0.6
  - 21.0.2
  * 23.0.1
JsonCpp
- JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.
- https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html
- Versions:
  - 1.9.5-GCCcore-11.3.0
  - 1.9.5-GCCcore-12.3.0
  - 1.9.5-GCCcore-13.2.0
  * 1.9.5-GCCcore-13.3.0
Julia
- Julia is a high-level, high-performance dynamic programming language for numerical computing
- https://julialang.org
- Versions:
  - 1.10.0-linux-x86_64
  - 1.10.3-linux-x86_64
  * 1.11.3-linux-x86_64
JupyterLab
- JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.
- https://jupyter.org/
- Versions:
  - 3.0.16-GCCcore-10.3.0
  - 3.5.0-GCCcore-11.3.0
  - 4.2.0-GCCcore-13.2.0
  * 4.2.5-GCCcore-13.3.0
KaHIP
- The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.
- https://kahip.github.io/
- Versions:
  * 3.16-gompi-2023a
LAME
- LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
- http://lame.sourceforge.net/
- Versions:
  - 3.100-GCCcore-11.3.0
  - 3.100-GCCcore-12.2.0
  - 3.100-GCCcore-12.3.0
  - 3.100-GCCcore-13.2.0
  * 3.100-GCCcore-13.3.0
LAMMPS
- LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.
- https://www.lammps.org
- Versions:
  * 29Aug2024-foss-2023b-kokkos
LERC
- LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
- https://github.com/Esri/lerc
- Versions:
  - 4.0.0-GCCcore-12.3.0
  - 4.0.0-GCCcore-13.2.0
  * 4.0.0-GCCcore-13.3.0
LLVM
- The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
- https://llvm.org/
- Versions:
  - 11.0.0-GCCcore-10.2.0
  - 11.1.0-GCCcore-10.3.0
  - 12.0.1-GCCcore-11.2.0
  - 14.0.3-GCCcore-11.3.0
  - 14.0.6-GCCcore-12.3.0-llvmlite
  - 15.0.5-GCCcore-12.2.0
  - 16.0.6-GCCcore-12.3.0
  - 16.0.6-GCCcore-13.2.0
  * 18.1.8-GCCcore-13.3.0
LMDB
- LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.
- https://symas.com/lmdb
- Versions:
  - 0.9.29-GCCcore-11.3.0
  - 0.9.31-GCCcore-12.3.0
  * 0.9.31-GCCcore-13.3.0
LZO
- Portable lossless data compression library
- https://www.oberhumer.com/opensource/lzo/
- Versions:
  * 2.10-GCCcore-13.3.0
LibSoup
- libsoup is an HTTP client/server library for GNOME. It uses GObjects and the glib main loop, to integrate well with GNOME applications, and also has a synchronous API, for use in threaded applications.
- https://wiki.gnome.org/Projects/libsoup
- Versions:
  - 3.0.7-GCC-11.2.0
  * 3.6.1-GCC-12.3.0
LibTIFF
- tiff: Library and tools for reading and writing TIFF data files
- https://libtiff.gitlab.io/libtiff/
- Versions:
  - 4.2.0-GCCcore-10.3.0
  - 4.3.0-GCCcore-11.2.0
  - 4.3.0-GCCcore-11.3.0
  - 4.4.0-GCCcore-12.2.0
  - 4.5.0-GCCcore-12.3.0
  - 4.6.0-GCCcore-13.2.0
  * 4.6.0-GCCcore-13.3.0
LinBox
- C++ library for exact, high-performance linear algebra
- https://linalg.org/
- Versions:
  * 1.7.0-gfbf-2023b
LittleCMS
- Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
- https://www.littlecms.com/
- Versions:
  - 2.12-GCCcore-10.3.0
  - 2.12-GCCcore-11.2.0
  - 2.13.1-GCCcore-11.3.0
  - 2.15-GCCcore-12.3.0
  - 2.15-GCCcore-13.2.0
  * 2.16-GCCcore-13.3.0
Lua
- Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
- https://www.lua.org/
- Versions:
  - 5.4.3-GCCcore-11.2.0
  - 5.4.6-GCCcore-12.3.0
  - 5.4.6-GCCcore-13.2.0
  * 5.4.7-GCCcore-13.3.0
M4
- GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
- https://www.gnu.org/software/m4/m4.html
- Versions:
  - 1.4.18-GCCcore-9.3.0
  - 1.4.18-GCCcore-10.2.0
  - 1.4.18-GCCcore-10.3.0
  - 1.4.18
  - 1.4.19-GCCcore-11.2.0
  - 1.4.19-GCCcore-11.3.0
  - 1.4.19-GCCcore-12.2.0
  - 1.4.19-GCCcore-12.3.0
  - 1.4.19-GCCcore-13.2.0
  - 1.4.19-GCCcore-13.3.0
  - 1.4.19-GCCcore-14.1.0
  - 1.4.19-GCCcore-14.2.0
  - 1.4.19-GCCcore-15.1.0
  - 1.4.19
  - 1.4.20-GCCcore-14.3.0
  * 1.4.20
MAFFT
- MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.
- https://mafft.cbrc.jp/alignment/software/source.html
- Versions:
  - 7.505-GCC-11.3.0-with-extensions
  * 7.520-GCC-12.3.0-with-extensions
MATLAB
- MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.
- https://www.mathworks.com/products/matlab
- Versions:
  * 2024b
MDI
- The MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods.
- https://github.com/MolSSI-MDI/MDI_Library
- Versions:
  - 1.4.26-gompi-2023a
  * 1.4.29-gompi-2023b
METIS
- METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
- https://karypis.github.io/glaros/projects/gp.html
- Versions:
  - 5.1.0-GCCcore-10.3.0
  - 5.1.0-GCCcore-11.2.0
  - 5.1.0-GCCcore-11.3.0
  - 5.1.0-GCCcore-12.3.0
  - 5.1.0-GCCcore-13.2.0
  * 5.1.0-GCCcore-13.3.0
MPC
- Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
- http://www.multiprecision.org/
- Versions:
  - 1.2.1-GCCcore-10.3.0
  - 1.2.1-GCCcore-11.3.0
  - 1.3.1-GCCcore-12.3.0
  - 1.3.1-GCCcore-13.2.0
  * 1.3.1-GCCcore-13.3.0
MPFI
- MPFI stands for Multiple Precision Floating-point Interval library.
- https://perso.ens-lyon.fr/nathalie.revol/software.html
- Versions:
  * 1.5.4-GCCcore-13.2.0
MPFR
- The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
- https://www.mpfr.org
- Versions:
  - 4.1.0-GCCcore-10.3.0
  - 4.1.0-GCCcore-11.2.0
  - 4.1.0-GCCcore-11.3.0
  - 4.2.0-GCCcore-12.2.0
  - 4.2.0-GCCcore-12.3.0
  - 4.2.1-GCCcore-13.2.0
  * 4.2.1-GCCcore-13.3.0
MPICH
- MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3).
- https://www.mpich.org/
- Versions:
  - 3.4.2-GCC-10.3.0
  * 4.3.0-GCC-14.2.0
Mako
- A super-fast templating language that borrows the best ideas from the existing templating languages
- https://www.makotemplates.org
- Versions:
  - 1.1.2-GCCcore-9.3.0
  - 1.1.3-GCCcore-10.2.0
  - 1.1.4-GCCcore-10.3.0
  - 1.1.4-GCCcore-11.2.0
  - 1.2.0-GCCcore-11.3.0
  - 1.2.4-GCCcore-12.2.0
  - 1.2.4-GCCcore-12.3.0
  - 1.2.4-GCCcore-13.2.0
  * 1.3.5-GCCcore-13.3.0
MariaDB-connector-c
- MariaDB Connector/C is used to connect applications developed in C/C++ to MariaDB and MySQL databases.
- https://downloads.mariadb.org/connector-c/
- Versions:
  * 3.2.2-GCCcore-10.3.0
Markdown
- This is a Python implementation of John Gruber's Markdown. It is almost completely compliant with the reference implementation, though there are a few known issues. Additional features are supported by the Available Extensions.
- https://python-markdown.github.io/
- Versions:
  * 3.6-GCCcore-13.2.0
MathWorksServiceHost
- MathWorks Service Host is a collection of background processes that provide required services to MATLAB and other MathWorks products. Starting from MATLAB Release 2024a, MATLAB requires MathWorks Service Host.
- Versions:
  * 2024.13.0.2
Maven
- Binary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.
- https://maven.apache.org/index.html
- Versions:
  - 3.6.3
  * 3.9.7
Maxent
- https://biodiversityinformatics.amnh.org/open_source/maxent/
- Versions:
  * 3.4.4
Mesa
- Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
- https://www.mesa3d.org/
- Versions:
  - 20.2.1-GCCcore-10.2.0
  - 21.1.1-GCCcore-10.3.0
  - 21.1.7-GCCcore-11.2.0
  - 22.0.3-GCCcore-11.3.0
  - 22.2.4-GCCcore-12.2.0
  - 23.1.4-GCCcore-12.3.0
  - 23.1.9-GCCcore-13.2.0
  * 24.1.3-GCCcore-13.3.0
Meson
- Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.
- https://mesonbuild.com
- Versions:
  - 0.55.1-GCCcore-9.3.0-Python-3.8.2
  - 0.55.3-GCCcore-10.2.0
  - 0.58.0-GCCcore-10.3.0
  - 0.58.2-GCCcore-11.2.0
  - 0.62.1-GCCcore-11.3.0
  - 0.64.0-GCCcore-12.2.0
  - 1.1.1-GCCcore-12.3.0
  - 1.2.3-GCCcore-13.2.0
  - 1.4.0-GCCcore-13.3.0
  * 1.6.1-GCCcore-14.2.0
Miniconda3
- Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.
- https://docs.conda.io/en/latest/miniconda.html
- Versions:
  * 24.7.1-0
Miniforge3
- Miniforge is a free minimal installer for conda and Mamba specific to conda-forge.
- https://github.com/conda-forge/miniforge
- Versions:
  - 24.1.2-0
  * 24.11.3-0
Mono
- An open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET.
- https://www.mono-project.com/
- Versions:
  * 6.12.0.122-GCCcore-11.2.0
NASM
- NASM: General-purpose x86 assembler
- https://www.nasm.us/
- Versions:
  - 2.15.05-GCCcore-10.3.0
  - 2.15.05-GCCcore-11.2.0
  - 2.15.05-GCCcore-11.3.0
  - 2.15.05-GCCcore-12.2.0
  - 2.16.01-GCCcore-12.3.0
  - 2.16.01-GCCcore-13.2.0
  * 2.16.03-GCCcore-13.3.0
NCCL
- The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
- https://developer.nvidia.com/nccl
- Versions:
  - 2.16.2-GCCcore-12.2.0-CUDA-12.0.0
  * 2.18.3-GCCcore-12.3.0-CUDA-12.1.1
NECI
- Standalone NECI codebase designed for FCIQMC and other stochastic quantum chemistry methods.
- https://github.com/ghb24/NECI_STABLE
- Versions:
  - 20230620-foss-2022b
  * 20230620-foss-2023a
NLopt
- NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
- http://ab-initio.mit.edu/wiki/index.php/NLopt
- Versions:
  - 2.7.0-GCCcore-10.3.0
  - 2.7.0-GCCcore-11.2.0
  - 2.7.1-GCCcore-11.3.0
  - 2.7.1-GCCcore-12.3.0
  * 2.7.1-GCCcore-13.3.0
NSPR
- Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
- https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR
- Versions:
  - 4.32-GCCcore-11.2.0
  - 4.34-GCCcore-11.3.0
  - 4.35-GCCcore-12.2.0
  - 4.35-GCCcore-12.3.0
  - 4.35-GCCcore-13.2.0
  * 4.35-GCCcore-13.3.0
NSS
- Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
- https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS
- Versions:
  - 3.69-GCCcore-11.2.0
  - 3.79-GCCcore-11.3.0
  - 3.85-GCCcore-12.2.0
  - 3.89.1-GCCcore-12.3.0
  - 3.94-GCCcore-13.2.0
  * 3.104-GCCcore-13.3.0
NTL
- NTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields.
- https://shoup.net/ntl/
- Versions:
  - 11.5.1-GCC-13.2.0
  * 11.5.1-GCC-13.3.0
Ninja
- Ninja is a small build system with a focus on speed.
- https://ninja-build.org/
- Versions:
  - 1.10.0-GCCcore-9.3.0
  - 1.10.1-GCCcore-10.2.0
  - 1.10.2-GCCcore-10.3.0
  - 1.10.2-GCCcore-11.2.0
  - 1.10.2-GCCcore-11.3.0
  - 1.11.1-GCCcore-12.2.0
  - 1.11.1-GCCcore-12.3.0
  - 1.11.1-GCCcore-13.2.0
  - 1.12.1-GCCcore-13.3.0
  * 1.12.1-GCCcore-14.2.0
Normaliz
- Normaliz is a open source tool for computations in affine monoids, vector configurations, rational polyhedra and rational cones. Normaliz now computes rational and algebraic polyhedra, i.e., polyhedra defined over real algebraic extensions of QQ.
- https://www.normaliz.uni-osnabrueck.de/
- Versions:
  * 3.10.3-gfbf-2023b
OCaml
- OCaml is a general purpose industrial-strength programming language with an emphasis on expressiveness and safety. Developed for more than 20 years at Inria it benefits from one of the most advanced type systems and supports functional, imperative and object-oriented styles of programming.
- http://ocaml.org/
- Versions:
  * 5.1.1-GCC-13.2.0
ORCA
- ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.
- https://orcaforum.kofo.mpg.de
- Versions:
  * 5.0.4-gompi-2023a
OSU-Micro-Benchmarks
- OSU Micro-Benchmarks
- https://mvapich.cse.ohio-state.edu/benchmarks/
- Versions:
  - 7.2-gompi-2023b
  * 7.5-gompi-2025.02
Octave
- GNU Octave is a high-level interpreted language, primarily intended for numerical computations.
- https://www.gnu.org/software/octave/
- Versions:
  * 7.1.0-foss-2021b
Olex2
- Olex2 is an easy-to-use program containing everything you need to solve, refine and finish small-molecule crystal structures using an intuitive user interface, honed over ten years of development.
- https://olexsys.org/olex2
- Versions:
  * 1.5
OpenBLAS
- OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
- https://www.openblas.net/
- Versions:
  - 0.3.9-GCC-9.3.0
  - 0.3.12-GCC-10.2.0
  - 0.3.15-GCC-10.3.0
  - 0.3.18-GCC-11.2.0
  - 0.3.20-GCC-11.3.0-int8
  - 0.3.20-GCC-11.3.0
  - 0.3.21-GCC-12.2.0
  - 0.3.23-GCC-12.3.0
  - 0.3.24-GCC-13.2.0
  * 0.3.27-GCC-13.3.0
OpenEXR
- OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
- https://www.openexr.com/
- Versions:
  - 3.1.5-GCCcore-11.3.0
  - 3.1.7-GCCcore-12.3.0
  - 3.2.0-GCCcore-13.2.0
  * 3.2.4-GCCcore-13.3.0
OpenFOAM
- OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
- https://www.openfoam.com/
- Versions:
  - v2312-foss-2023a
  * v2406-foss-2023a
OpenJPEG
- OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
- https://www.openjpeg.org/
- Versions:
  - 2.4.0-GCCcore-11.2.0
  - 2.5.0-GCCcore-11.3.0
  - 2.5.0-GCCcore-12.3.0
  - 2.5.0-GCCcore-13.2.0
  * 2.5.2-GCCcore-13.3.0
OpenMPI
- The Open MPI Project is an open source MPI-3 implementation.
- https://www.open-mpi.org/
- Versions:
  - 4.0.3-GCC-9.3.0
  - 4.0.5-GCC-10.2.0
  - 4.0.5-gcccuda-2020b
  - 4.1.1-GCC-10.3.0
  - 4.1.1-GCC-11.2.0
  - 4.1.4-GCC-11.3.0
  - 4.1.4-GCC-12.2.0
  - 4.1.5-GCC-12.3.0
  - 4.1.6-GCC-13.2.0
  - 5.0.3-GCC-13.3.0
  * 5.0.7-GCC-14.2.0
OpenPGM
- OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
- https://code.google.com/p/openpgm/
- Versions:
  - 5.2.122-GCCcore-10.3.0
  - 5.2.122-GCCcore-11.3.0
  - 5.2.122-GCCcore-12.3.0
  - 5.2.122-GCCcore-13.2.0
  - 5.2.122-GCCcore-13.3.0
  * 5.2.122-GCCcore-14.2.0
OpenRefine
- OpenRefine is a power tool that allows you to load data, understand it, clean it up, reconcile it, and augment it with data coming from the web.
- https://github.com/OpenRefine/OpenRefine
- Versions:
  * 3.9.3-Java-21
OpenSSL
- The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
- https://www.openssl.org/
- Versions:
  - 1.1
  - 1.1.1w-GCCcore-9.3.0
  - 1.1.1w-GCCcore-10.2.0
  * 3
PARI-GP
- PARI/GP is a widely used computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful functions to compute with mathematical entities such as matrices, polynomials, power series, algebraic numbers etc., and a lot of transcendental functions. PARI is also available as a C library to allow for faster computations.
- https://pari.math.u-bordeaux.fr
- Versions:
  * 2.15.5-GCCcore-13.2.0
PCRE
- The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
- https://www.pcre.org/
- Versions:
  - 8.44-GCCcore-10.3.0
  - 8.45-GCCcore-11.2.0
  - 8.45-GCCcore-11.3.0
  - 8.45-GCCcore-12.3.0
  - 8.45-GCCcore-13.2.0
  * 8.45-GCCcore-13.3.0
PCRE2
- The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
- https://www.pcre.org/
- Versions:
  - 10.36-GCCcore-10.3.0
  - 10.37-GCCcore-11.2.0
  - 10.40-GCCcore-11.3.0
  - 10.40-GCCcore-12.2.0
  - 10.42-GCCcore-12.3.0
  - 10.42-GCCcore-13.2.0
  - 10.43-GCCcore-13.3.0
  * 10.45-GCCcore-14.2.0
PDAL
- PDAL is Point Data Abstraction Library. It is a C/C++ open source library and applications for translating and processing point cloud data. It is not limited to LiDAR data, although the focus and impetus for many of the tools in the library have their origins in LiDAR.
- https://pdal.io/
- Versions:
  * 2.8.2-foss-2023a
PLUMED
- PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
- https://www.plumed.org
- Versions:
  - 2.9.0-foss-2023a
  * 2.9.2-foss-2023b
PLY
- PLY is yet another implementation of lex and yacc for Python.
- https://www.dabeaz.com/ply/
- Versions:
  * 3.11-GCCcore-12.3.0
PMIx
- Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
- https://pmix.org/
- Versions:
  - 3.1.5-GCCcore-9.3.0
  - 3.1.5-GCCcore-10.2.0
  - 3.2.3-GCCcore-10.3.0
  - 4.1.0-GCCcore-11.2.0
  - 4.1.2-GCCcore-11.3.0
  - 4.2.2-GCCcore-12.2.0
  - 4.2.4-GCCcore-12.3.0
  - 4.2.6-GCCcore-13.2.0
  - 5.0.2-GCCcore-13.3.0
  * 5.0.6-GCCcore-14.2.0
POV-Ray
- The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports.
- https://www.povray.org/
- Versions:
  - 3.7.0.10-GCC-11.3.0
  * 3.7.0.10-GCC-12.3.0
PROJ
- Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
- https://proj.org
- Versions:
  - 8.0.1-GCCcore-10.3.0
  - 8.1.0-GCCcore-11.2.0
  - 9.0.0-GCCcore-11.3.0
  - 9.2.0-GCCcore-12.3.0
  - 9.3.1-GCCcore-13.2.0
  * 9.4.1-GCCcore-13.3.0
PRRTE
- PRRTE is the PMIx Reference RunTime Environment
- https://docs.prrte.org/
- Versions:
  - 3.0.5-GCCcore-13.3.0
  * 3.0.8-GCCcore-14.2.0
Pandoc
- If you need to convert files from one markup format into another, pandoc is your swiss-army knife
- https://pandoc.org
- Versions:
  - 3.1.2
  * 3.6.2
Pango
- Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
- https://pango.gnome.org/
- Versions:
  - 1.48.5-GCCcore-10.3.0
  - 1.48.8-GCCcore-11.2.0
  - 1.50.7-GCCcore-11.3.0
  - 1.50.12-GCCcore-12.2.0
  - 1.50.14-GCCcore-12.3.0
  - 1.51.0-GCCcore-13.2.0
  * 1.54.0-GCCcore-13.3.0
ParaView
- ParaView is a scientific parallel visualizer.
- https://www.paraview.org
- Versions:
  - 5.11.2-foss-2023a
  - 5.12.0-foss-2023b
  * 5.13.2-foss-2023a
Parsl
- Parsl extends parallelism in Python beyond a single computer. You can use Parsl just like Python's parallel executors but across multiple cores and nodes. However, the real power of Parsl is in expressing multi-step workflows of functions. Parsl lets you chain functions together and will launch each function as inputs and computing resources are available.
- https://parsl-project.org/
- Versions:
  - 2023.7.17-GCCcore-11.3.0
  * 2024.4.22-GCCcore-12.3.0
Perl
- Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
- https://www.perl.org/
- Versions:
  - 5.30.2-GCCcore-9.3.0-minimal
  - 5.30.2-GCCcore-9.3.0
  - 5.32.0-GCCcore-10.2.0-minimal
  - 5.32.0-GCCcore-10.2.0
  - 5.32.1-GCCcore-10.3.0-minimal
  - 5.32.1-GCCcore-10.3.0
  - 5.34.0-GCCcore-11.2.0-minimal
  - 5.34.0-GCCcore-11.2.0
  - 5.34.1-GCCcore-11.3.0
  - 5.36.0-GCCcore-12.2.0
  - 5.36.1-GCCcore-12.3.0
  - 5.38.0-GCCcore-13.2.0
  - 5.38.0
  - 5.38.2-GCCcore-13.3.0
  * 5.40.0-GCCcore-14.2.0
Perl-bundle-CPAN
- A set of common packages from CPAN
- https://www.perl.org/
- Versions:
  - 5.36.1-GCCcore-12.3.0
  - 5.38.0-GCCcore-13.2.0
  - 5.38.2-GCCcore-13.3.0
  * 5.40.0-GCCcore-14.2.0
PhyML
- PhyML is a software package that uses modern statistical approaches to analyse alignments of nucleotide or amino acid sequences in a phylogenetic framework.
- https://github.com/stephaneguindon/phyml
- Versions:
  * 3.3.20220408-foss-2023a
Pillow
- Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
- https://pillow.readthedocs.org/
- Versions:
  - 8.2.0-GCCcore-10.3.0
  - 8.3.2-GCCcore-11.2.0
  - 9.1.1-GCCcore-11.3.0
  - 9.4.0-GCCcore-12.2.0
  - 10.0.0-GCCcore-12.3.0
  - 10.2.0-GCCcore-13.2.0
  * 10.4.0-GCCcore-13.3.0
Pillow-SIMD
- Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
- https://github.com/uploadcare/pillow-simd
- Versions:
  - 9.5.0-GCCcore-12.3.0
  - 10.4.0-GCCcore-13.2.0
  * 10.4.0-GCCcore-13.3.0
PnetCDF
- Parallel netCDF: A Parallel I/O Library for NetCDF File Access
- https://parallel-netcdf.github.io/
- Versions:
  * 1.12.3-gompi-2023a
PostgreSQL
- PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
- https://www.postgresql.org/
- Versions:
  - 13.4-GCCcore-11.2.0
  - 14.4-GCCcore-11.3.0
  - 16.1-GCCcore-12.3.0
  - 16.1-GCCcore-13.2.0
  * 16.4-GCCcore-13.3.0
PyBerny
- PyBerny is an optimizer of molecular geometries with respect to the total energy, using nuclear gradient information.
- https://github.com/jhrmnn/pyberny
- Versions:
  - 0.6.3-foss-2022b
  * 0.6.3-foss-2023a
PyCharm
- PyCharm Community Edition: Python IDE for Professional Developers
- https://www.jetbrains.com/pycharm/
- Versions:
  - 2022.3.2
  * 2024.1.6
PyCheMPS2
- PyCheMPS2 is a python interface to CheMPS2, for compilation without MPI. CheMPS2 is a scientific library which contains a spin-adapted implementation of the density matrix renormalization group (DMRG) for ab initio quantum chemistry.
- https://sebwouters.github.io/CheMPS2
- Versions:
  - 1.8.12-foss-2022b
  * 1.8.12-foss-2023a
PyHMMER
- HMMER is a biological sequence analysis tool that uses profile hidden Markov models to search for sequence homologs. HMMER3 is developed and maintained by the Eddy/Rivas Laboratory at Harvard University. pyhmmer is a Python package, implemented using the Cython language, that provides bindings to HMMER3. It directly interacts with the HMMER internals, which has the following advantages over CLI wrappers (like hmmer-py)
- https://github.com/althonos/pyhmmer
- Versions:
  * 0.10.6-gompi-2023a
PyQt-builder
- PyQt-builder is the PEP 517 compliant build system for PyQt and projects that extend PyQt. It extends the SIP build system and uses Qt’s qmake to perform the actual compilation and installation of extension modules.
- http://www.example.com
- Versions:
  * 1.15.4-GCCcore-12.3.0
PyQt5
- PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework.
- https://www.riverbankcomputing.com/software/pyqt
- Versions:
  - 5.15.4-GCCcore-11.2.0
  * 5.15.10-GCCcore-12.3.0
PySCF
- PySCF is an open-source collection of electronic structure modules powered by Python.
- http://www.pyscf.org
- Versions:
  * 2.4.0-foss-2022b
PyTorch
- Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
- https://pytorch.org/
- Versions:
  - 2.1.2-foss-2023a-CUDA-12.1.1
  - 2.1.2-foss-2023a
  * 2.1.2-foss-2023b
PyYAML
- PyYAML is a YAML parser and emitter for the Python programming language.
- https://github.com/yaml/pyyaml
- Versions:
  - 5.4.1-GCCcore-11.2.0
  - 6.0-GCCcore-11.3.0
  - 6.0-GCCcore-12.2.0
  - 6.0-GCCcore-12.3.0
  - 6.0.1-GCCcore-13.2.0
  * 6.0.2-GCCcore-13.3.0
PyZMQ
- Python bindings for ZeroMQ
- https://www.zeromq.org/bindings:python
- Versions:
  - 24.0.1-GCCcore-11.3.0
  - 25.1.1-GCCcore-12.3.0
  - 25.1.2-GCCcore-13.2.0
  * 26.2.0-GCCcore-13.3.0
Pysam
- Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
- https://github.com/pysam-developers/pysam
- Versions:
  - 0.22.0-GCC-12.3.0
  * 0.22.0-GCC-13.2.0
Python
- Python is a programming language that lets you work more quickly and integrate your systems more effectively.
- https://python.org/
- Versions:
  - 2.7.18-GCCcore-9.3.0
  - 2.7.18-GCCcore-10.2.0
  - 2.7.18-GCCcore-11.2.0-bare
  - 2.7.18-GCCcore-11.3.0-bare
  - 2.7.18-GCCcore-12.2.0-bare
  - 2.7.18-GCCcore-12.3.0
  - 3.8.2-GCCcore-9.3.0
  - 3.8.6-GCCcore-10.2.0
  - 3.9.5-GCCcore-10.3.0-bare
  - 3.9.5-GCCcore-10.3.0
  - 3.9.6-GCCcore-11.2.0-bare
  - 3.9.6-GCCcore-11.2.0
  - 3.10.4-GCCcore-11.3.0-bare
  - 3.10.4-GCCcore-11.3.0
  - 3.10.8-GCCcore-12.2.0-bare
  - 3.10.8-GCCcore-12.2.0
  - 3.11.3-GCCcore-12.3.0
  - 3.11.5-GCCcore-13.2.0
  - 3.12.3-GCCcore-13.3.0
  - 3.13.1-GCCcore-14.2.0
  * 3.13.5-GCCcore-14.3.0
Python-Data-Science
- UCO exclusive Python data science module. Loads Sympy, Matplotlib, and SciPy bundle.
- Versions:
  - 2021a-Python-3.9.5
  - 2022a-Python-3.10.4
  * 2023b-Python-3.11.5
Python-bundle-PyPI
- Bundle of Python packages from PyPI
- https://python.org/
- Versions:
  - 2023.06-GCCcore-12.3.0
  - 2023.10-GCCcore-13.2.0
  * 2024.06-GCCcore-13.3.0
QCA
- Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX.
- https://userbase.kde.org/QCA
- Versions:
  - 2.3.5-GCCcore-11.2.0
  * 2.3.9-GCCcore-12.3.0
QGIS
- QGIS is a user friendly Open Source Geographic Information System (GIS).
- http://www.qgis.org/
- Versions:
  - 3.28.1-foss-2021b
  * 3.40.2-foss-2023a
QIIME2
- QIIME 2 is a powerful, extensible, and decentralized microbiome bioinformatics platform that is free, open source, and community developed.
- https://qiime2.org
- Versions:
  - 2023.7.0-foss-2022a
  * 2024.10.1-foss-2023a-amplicon
QScintilla
- QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control
- https://www.riverbankcomputing.com/software/qscintilla
- Versions:
  - 2.11.6-GCCcore-11.2.0
  * 2.14.1-GCCcore-12.3.0
Qhull
- Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
- http://www.qhull.org
- Versions:
  - 2020.2-GCCcore-10.3.0
  - 2020.2-GCCcore-11.2.0
  - 2020.2-GCCcore-11.3.0
  - 2020.2-GCCcore-12.2.0
  - 2020.2-GCCcore-12.3.0
  - 2020.2-GCCcore-13.2.0
  * 2020.2-GCCcore-13.3.0
Qt5
- Qt is a comprehensive cross-platform C++ application framework.
- https://qt.io/
- Versions:
  - 5.15.2-GCCcore-11.2.0
  - 5.15.5-GCCcore-11.3.0
  - 5.15.7-GCCcore-12.2.0
  - 5.15.10-GCCcore-12.3.0
  - 5.15.13-GCCcore-13.2.0
  * 5.15.16-GCCcore-13.3.0
Qt5Webkit
- Qt Port of WebKit. WebKit is an open source web browser engine.
- https://github.com/qt/qtwebkit
- Versions:
  - 5.212.0-alpha4-GCCcore-11.2.0
  - 5.212.0-alpha4-GCCcore-11.3.0
  * 5.212.0-alpha4-GCCcore-12.3.0
Qt6
- Qt is a comprehensive cross-platform C++ application framework.
- https://qt.io/
- Versions:
  - 6.6.3-GCCcore-13.2.0
  * 6.7.2-GCCcore-13.3.0
QtKeychain
- Platform-independent Qt API for storing passwords securely.
- https://github.com/frankosterfeld/qtkeychain
- Versions:
  - 0.13.2-GCCcore-11.2.0
  * 0.14.3-GCCcore-12.3.0
Quandl
- A Python library for Quandl’s RESTful API.
- https://pypi.python.org/pypi/Quandl
- Versions:
  * 3.6.1-foss-2021a
QuantumESPRESSO
- Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
- https://www.quantum-espresso.org
- Versions:
  - 7.3.1-foss-2023a
  * 7.4-foss-2024a
Qwt
- The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background.
- https://qwt.sourceforge.io/
- Versions:
  - 6.2.0-GCCcore-11.2.0
  - 6.2.0-GCCcore-12.2.0
  * 6.3.0-GCCcore-12.3.0
R
- R is a free software environment for statistical computing and graphics.
- https://www.r-project.org/
- Versions:
  - 4.1.2-foss-2021b
  - 4.2.1-foss-2022a
  - 4.3.2-gfbf-2023a
  - 4.3.3-gfbf-2023b
  * 4.4.2-gfbf-2024a
R-bundle-Bioconductor
- Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
- https://bioconductor.org
- Versions:
  - 3.15-foss-2022a-R-4.2.1
  - 3.18-foss-2023a-R-4.3.2
  * 3.20-foss-2024a-R-4.4.2
R-bundle-CRAN
- Bundle of R packages from CRAN
- https://www.r-project.org/
- Versions:
  - 2023.12-foss-2023a
  * 2024.11-foss-2024a
RAxML
- RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.
- https://github.com/stamatak/standard-RAxML
- Versions:
  * 8.2.13-gompi-2023b-avx2
RAxML-NG
- RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree.
- https://github.com/amkozlov/raxml-ng
- Versions:
  - 1.0.3-GCC-10.2.0
  * 1.2.2-GCC-13.2.0
RE2
- RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
- https://github.com/google/re2
- Versions:
  - 2022-06-01-GCCcore-11.3.0
  - 2023-08-01-GCCcore-12.3.0
  - 2024-03-01-GCCcore-13.2.0
  * 2024-07-02-GCCcore-13.3.0
RStudio-Server
- This is the RStudio Server version. RStudio is a set of integrated tools designed to help you be more productive with R. The server can be started with: rserver --server-daemonize=0 --www-port=8787 If you need a database config one can be created with: MYTMP=`mktemp -d` && echo -e "provider=sqlite directory=${MYTMP}/sqlite" > "${MYTMP}/db.conf" and then used with: rserver ... --database-config-file="${MYTMP}/db.conf"
- https://www.rstudio.com/
- Versions:
  - 2023.12.1+402-gfbf-2023b-Java-11-R-4.3.3
  * 2024.12.0+467-foss-2024a-Java-17-R-4.4.2
RapidJSON
- A fast JSON parser/generator for C++ with both SAX/DOM style API
- https://rapidjson.org
- Versions:
  - 1.1.0-GCCcore-11.3.0
  - 1.1.0-20230928-GCCcore-12.3.0
  * 1.1.0-20240815-GCCcore-13.3.0
Ruby
- Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.
- https://www.ruby-lang.org
- Versions:
  - 3.0.1-GCCcore-11.2.0
  - 3.0.3-GCCcore-11.3.0
  - 3.0.3-GCCcore-12.3.0
  - 3.3.0-GCCcore-12.3.0
  * 3.4.2-GCCcore-13.2.0
Rust
- Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
- https://www.rust-lang.org
- Versions:
  - 1.52.1-GCCcore-10.3.0
  - 1.54.0-GCCcore-11.2.0
  - 1.60.0-GCCcore-11.3.0
  - 1.65.0-GCCcore-12.2.0
  - 1.70.0-GCCcore-12.3.0
  - 1.73.0-GCCcore-13.2.0
  - 1.75.0-GCCcore-12.3.0
  - 1.76.0-GCCcore-13.2.0
  - 1.78.0-GCCcore-13.3.0
  - 1.83.0-GCCcore-13.3.0
  * 1.85.1-GCCcore-14.2.0
SAMtools
- SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
- https://www.htslib.org/
- Versions:
  - 1.16.1-GCC-11.3.0
  - 1.18-GCC-12.3.0
  * 1.21-GCC-13.3.0
SCOTCH
- Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
- https://www.labri.fr/perso/pelegrin/scotch/
- Versions:
  - 7.0.3-gompi-2023a
  * 7.0.6-gompi-2024a
SCons
- SCons is a software construction tool.
- https://www.scons.org
- Versions:
  - 4.6.0-GCCcore-13.2.0
  * 4.9.0-GCCcore-13.3.0
SDL2
- SDL: Simple DirectMedia Layer, a cross-platform multimedia library
- https://www.libsdl.org/
- Versions:
  - 2.0.20-GCCcore-11.2.0
  - 2.0.22-GCCcore-11.3.0
  - 2.26.3-GCCcore-12.2.0
  - 2.28.2-GCCcore-12.3.0
  - 2.28.5-GCCcore-13.2.0
  * 2.30.6-GCCcore-13.3.0
SIP
- SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.
- http://www.riverbankcomputing.com/software/sip/
- Versions:
  * 6.8.1-GCCcore-12.3.0
SOCI
- SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++.
- http://soci.sourceforge.net/
- Versions:
  - 4.0.3-GCC-11.3.0
  - 4.0.3-GCC-13.2.0
  * 4.0.3-GCC-13.3.0
SQLite
- SQLite: SQL Database Engine in a C Library
- https://www.sqlite.org/
- Versions:
  - 3.31.1-GCCcore-9.3.0
  - 3.33.0-GCCcore-10.2.0
  - 3.35.4-GCCcore-10.3.0
  - 3.36-GCCcore-11.2.0
  - 3.38.3-GCCcore-11.3.0
  - 3.39.4-GCCcore-12.2.0
  - 3.42.0-GCCcore-12.3.0
  - 3.43.1-GCCcore-13.2.0
  - 3.45.3-GCCcore-13.3.0
  - 3.47.2-GCCcore-14.2.0
  * 3.50.1-GCCcore-14.3.0
SRA-Toolkit
- The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format
- https://github.com/ncbi/sra-tools
- Versions:
  - 3.0.10-gompi-2023a
  * 3.2.0-gompi-2024a
SUNDIALS
- SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers
- https://computing.llnl.gov/projects/sundials
- Versions:
  - 6.3.0-foss-2021b
  * 6.6.0-foss-2023a
SWIG
- SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
- http://www.swig.org/
- Versions:
  - 4.1.1-GCCcore-12.3.0
  - 4.1.1-GCCcore-13.2.0
  - 4.2.1-GCCcore-13.3.0
  * 4.3.0-GCCcore-13.2.0
SYMMETRICA
- Symmetrica is a Collection of C routines for representation theory.
- https://www.algorithm.uni-bayreuth.de/en/research/SYMMETRICA
- Versions:
  * 2.0-GCCcore-13.2.0
Sagemath
- Sage is open source mathematical software released under the GNU General Public Licence GPLv2+, and includes packages that have compatible software licenses. People all around the globe have contributed to the development of Sage. Full documentation is available online.
- https://doc.sagemath.org/html/en/index.html
- Versions:
  - 10.4-foss-2023b-jupyterlab
  * 10.4-foss-2023b
ScaFaCoS
- ScaFaCoS is a library of scalable fast coulomb solvers.
- http://www.scafacos.de/
- Versions:
  - 1.0.4-foss-2023a
  * 1.0.4-foss-2023b
ScaLAPACK
- The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
- https://www.netlib.org/scalapack/
- Versions:
  - 2.1.0-gompi-2020a
  - 2.1.0-gompi-2020b
  - 2.1.0-gompi-2021a-fb
  - 2.1.0-gompi-2021b-fb
  - 2.1.0-gompic-2020b
  - 2.2.0-gompi-2022a-fb
  - 2.2.0-gompi-2022b-fb
  - 2.2.0-gompi-2023a-fb
  - 2.2.0-gompi-2023b-fb
  * 2.2.0-gompi-2024a-fb
SciPy-bundle
- Bundle of Python packages for scientific software
- https://python.org/
- Versions:
  - 2021.05-foss-2021a
  - 2021.10-foss-2021b
  - 2022.05-foss-2022a
  - 2023.02-gfbf-2022b
  - 2023.07-gfbf-2023a
  - 2023.11-gfbf-2023b
  - 2024.05-gfbf-2024a
  * 2024.06-foss-2023a-Python-2.7.18
Seaborn
- Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.
- https://seaborn.pydata.org/
- Versions:
  - 0.12.1-foss-2022a
  - 0.13.2-gfbf-2023a
  * 0.13.2-gfbf-2024a
Shapely
- Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries.
- https://github.com/Toblerity/Shapely
- Versions:
  - 1.8.2-foss-2021b
  - 2.0.1-gfbf-2023a
  * 2.0.6-gfbf-2024a
SharedMeatAxe
- This is an autotoolized shared library version of C MeatAxe 2.4.24, a set of programs for computing with modular representations.
- https://github.com/simon-king-jena/SharedMeatAxe
- Versions:
  * 1.0.1-GCC-13.2.0
Siesta
- SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.
- https://siesta-project.org/siesta/About/overview.html
- Versions:
  - 4.1.5-foss-2022a
  * 5.2.2-foss-2023a
Simple-DFTD3
- Reimplementation of the D3 dispersion correction. The s-dftd3 project aims to provide a user-friendly and uniform interface to the D3 dispersion model and for the calculation of DFT-D3 dispersion corrections.
- https://dftd3.readthedocs.io
- Versions:
  * 1.2.1-gfbf-2023a
Singular
- Singular is a computer algebra system for polynomial computations, with special emphasis on commutative and non-commutative algebra, algebraic geometry, and singularity theory.
- https://www.singular.uni-kl.de/
- Versions:
  * 4.4.0-gfbf-2023b
Spark
- Spark is Hadoop MapReduce done in memory
- https://spark.apache.org
- Versions:
  * 3.5.1-foss-2023a-Java-17
Stacks
- Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
- https://catchenlab.life.illinois.edu/stacks/
- Versions:
  - 2.62-foss-2022a
  * 2.68-foss-2023a
Structure
- The program structure is a free software package for using multi-locus genotype data to investigate population structure.
- https://web.stanford.edu/group/pritchardlab/structure.html
- Versions:
  * 2.3.4-GCC-12.2.0
SuiteSparse
- SuiteSparse is a collection of libraries to manipulate sparse matrices.
- https://faculty.cse.tamu.edu/davis/suitesparse.html
- Versions:
  - 5.10.1-foss-2021a-METIS-5.1.0
  - 5.10.1-foss-2021b-METIS-5.1.0
  - 5.13.0-foss-2022a-METIS-5.1.0
  - 7.1.0-foss-2023a
  * 7.8.2-foss-2024a-METIS-5.1.0
SymEngine
- SymEngine is a standalone fast C++ symbolic manipulation library
- https://github.com/symengine/symengine
- Versions:
  * 0.11.2-gfbf-2023b
SymEngine-python
- Python wrappers to the C++ library SymEngine, a fast C++ symbolic manipulation library.
- https://github.com/symengine/symengine.py
- Versions:
  * 0.11.0-gfbf-2023b
Szip
- Szip compression software, providing lossless compression of scientific data
- https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html
- Versions:
  - 2.1.1-GCCcore-9.3.0
  - 2.1.1-GCCcore-10.3.0
  - 2.1.1-GCCcore-11.2.0
  - 2.1.1-GCCcore-11.3.0
  - 2.1.1-GCCcore-12.2.0
  - 2.1.1-GCCcore-12.3.0
  - 2.1.1-GCCcore-13.2.0
  * 2.1.1-GCCcore-13.3.0
TOML-Fortran
- TOML parser for Fortran projects
- https://github.com/toml-f/toml-f
- Versions:
  * 0.4.2-GCC-12.3.0
Tcl
- Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
- https://www.tcl.tk/
- Versions:
  - 8.6.10-GCCcore-9.3.0
  - 8.6.10-GCCcore-10.2.0
  - 8.6.11-GCCcore-10.3.0
  - 8.6.11-GCCcore-11.2.0
  - 8.6.12-GCCcore-11.3.0
  - 8.6.12-GCCcore-12.2.0
  - 8.6.13-GCCcore-12.3.0
  - 8.6.13-GCCcore-13.2.0
  - 8.6.14-GCCcore-13.3.0
  - 8.6.16-GCCcore-14.2.0
  * 9.0.1-GCCcore-14.3.0
TensorFlow
- An open-source software library for Machine Intelligence
- https://www.tensorflow.org/
- Versions:
  - 2.9.1-foss-2022a
  * 2.15.1-foss-2023a
Tk
- Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
- https://www.tcl.tk/
- Versions:
  - 8.6.11-GCCcore-10.3.0
  - 8.6.11-GCCcore-11.2.0
  - 8.6.12-GCCcore-11.3.0
  - 8.6.12-GCCcore-12.2.0
  - 8.6.13-GCCcore-12.3.0
  - 8.6.13-GCCcore-13.2.0
  * 8.6.14-GCCcore-13.3.0
Tkinter
- Tkinter module, built with the Python buildsystem
- https://python.org/
- Versions:
  - 3.9.5-GCCcore-10.3.0
  - 3.9.6-GCCcore-11.2.0
  - 3.10.4-GCCcore-11.3.0
  - 3.10.8-GCCcore-12.2.0
  - 3.11.3-GCCcore-12.3.0
  - 3.11.5-GCCcore-13.2.0
  * 3.12.3-GCCcore-13.3.0
Trimmomatic
- Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.
- http://www.usadellab.org/cms/?page=trimmomatic
- Versions:
  - 0.39-Java-11
  * 0.39-Java-17
TurboVNC
- TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.
- https://www.turbovnc.org
- Versions:
  - 3.0.1-GCCcore-11.3.0
  * 3.1.2-GCCcore-13.3.0
UCC
- UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
- https://www.openucx.org/
- Versions:
  - 1.0.0-GCCcore-11.3.0
  - 1.1.0-GCCcore-12.2.0
  - 1.2.0-GCCcore-12.3.0
  - 1.2.0-GCCcore-13.2.0
  - 1.3.0-GCCcore-13.3.0
  * 1.3.0-GCCcore-14.2.0
UCX
- Unified Communication X An open-source production grade communication framework for data centric and high-performance applications
- https://www.openucx.org/
- Versions:
  - 1.8.0-GCCcore-9.3.0
  - 1.9.0-GCCcore-10.2.0-CUDA-11.1.1
  - 1.9.0-GCCcore-10.2.0
  - 1.10.0-GCCcore-10.3.0
  - 1.11.2-GCCcore-11.2.0
  - 1.12.1-GCCcore-11.3.0
  - 1.13.1-GCCcore-12.2.0
  - 1.14.1-GCCcore-12.3.0
  - 1.15.0-GCCcore-13.2.0
  - 1.16.0-GCCcore-13.3.0
  * 1.18.0-GCCcore-14.2.0
UCX-CUDA
- Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.
- http://www.openucx.org/
- Versions:
  - 1.11.2-GCCcore-11.2.0-CUDA-11.4.1
  - 1.13.1-GCCcore-12.2.0-CUDA-12.0.0
  * 1.14.1-GCCcore-12.3.0-CUDA-12.1.1
UDUNITS
- UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
- https://www.unidata.ucar.edu/software/udunits/
- Versions:
  - 2.2.28-GCCcore-10.3.0
  - 2.2.28-GCCcore-11.2.0
  - 2.2.28-GCCcore-11.3.0
  - 2.2.28-GCCcore-12.3.0
  - 2.2.28-GCCcore-13.2.0
  * 2.2.28-GCCcore-13.3.0
UnZip
- UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.
- http://www.info-zip.org/UnZip.html
- Versions:
  - 6.0-GCCcore-9.3.0
  - 6.0-GCCcore-10.2.0
  - 6.0-GCCcore-10.3.0
  - 6.0-GCCcore-11.2.0
  - 6.0-GCCcore-11.3.0
  - 6.0-GCCcore-12.2.0
  - 6.0-GCCcore-12.3.0
  - 6.0-GCCcore-13.2.0
  - 6.0-GCCcore-13.3.0
  - 6.0-GCCcore-14.2.0
  * 6.0-GCCcore-14.3.0
UniFrac
- UniFrac is the de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac, in both double and single precision (fp32). This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.
- https://github.com/biocore/unifrac-binaries
- Versions:
  - 1.3.2-foss-2022a
  * 1.4-foss-2023a
VMD
- VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
- https://www.ks.uiuc.edu/Research/vmd
- Versions:
  - 1.9.4a57-foss-2022a
  * 1.9.4a57-foss-2023a
VSCode
- Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos.
- https://code.visualstudio.com/
- Versions:
  * 1.88.1
VSEARCH
- VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
- https://github.com/torognes/vsearch
- Versions:
  - 2.22.1-GCC-11.3.0
  - 2.25.0-GCC-12.3.0
  * 2.28.1-GCC-10.2.0
VTK
- The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
- https://www.vtk.org
- Versions:
  - 9.3.0-foss-2023a
  - 9.3.0-foss-2023b
  * 9.3.1-foss-2024a
VirtualGL
- VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration.
- https://virtualgl.org/
- Versions:
  * 3.1.1-GCC-13.3.0
Voro++
- Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.
- http://math.lbl.gov/voro++/
- Versions:
  - 0.4.6-GCCcore-12.3.0
  - 0.4.6-GCCcore-13.2.0
  * 0.4.6-GCCcore-13.3.0
Wayland
- Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
- https://wayland.freedesktop.org/
- Versions:
  - 1.21.0-GCCcore-11.2.0
  - 1.22.0-GCCcore-12.3.0
  - 1.22.0-GCCcore-13.2.0
  - 1.23.0-GCCcore-13.3.0
  * 1.23.92-GCCcore-14.2.0
Waylandpp
- Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding. The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland.
- https://github.com/NilsBrause/waylandpp
- Versions:
  - 1.0.0-GCCcore-11.2.0
  * 1.0.0-GCCcore-12.3.0
WebKitGTK+
- WebKitGTK+ is a full-featured port of the WebKit rendering engine, suitable for projects requiring any kind of web integration, from hybrid HTML/CSS applications to full-fledged web browsers. It offers WebKit's full functionality and is useful in a wide range of systems from desktop computers to embedded systems like phones, tablets, and televisions.
- https://webkitgtk.org/
- Versions:
  - 2.37.1-GCC-11.2.0
  * 2.41.4-foss-2023a
X11
- The X Window System (X11) is a windowing system for bitmap displays
- https://www.x.org
- Versions:
  - 20201008-GCCcore-10.2.0
  - 20210518-GCCcore-10.3.0
  - 20210802-GCCcore-11.2.0
  - 20220504-GCCcore-11.3.0
  - 20221110-GCCcore-12.2.0
  - 20230603-GCCcore-12.3.0
  - 20231019-GCCcore-13.2.0
  - 20240607-GCCcore-13.3.0
  * 20250521-GCCcore-14.2.0
XCFun
- Arbitrary order exchange-correlation functional library
- https://xcfun.readthedocs.io
- Versions:
  - 2.1.1-GCCcore-12.2.0
  * 2.1.1-GCCcore-12.3.0
XML-LibXML
- Perl binding for libxml2
- https://metacpan.org/pod/distribution/XML-LibXML/LibXML.pod
- Versions:
  * 2.0209-GCCcore-12.3.0
XML-Parser
- This is a Perl extension interface to James Clark's XML parser, expat.
- https://search.cpan.org/~toddr/XML-Parser-2.46/
- Versions:
  - 2.46-GCCcore-12.3.0-Perl-5.36.1
  * 2.47-GCCcore-13.3.0-Perl-5.38.2
XZ
- xz: XZ utilities
- https://tukaani.org/xz/
- Versions:
  - 5.2.5-GCCcore-9.3.0
  - 5.2.5-GCCcore-10.2.0
  - 5.2.5-GCCcore-10.3.0
  - 5.2.5-GCCcore-11.2.0
  - 5.2.5-GCCcore-11.3.0
  - 5.2.7-GCCcore-12.2.0
  - 5.4.2-GCCcore-12.3.0
  - 5.4.4-GCCcore-13.2.0
  - 5.4.5-GCCcore-13.3.0
  - 5.6.3-GCCcore-14.2.0
  * 5.8.1-GCCcore-14.3.0
Xerces-C++
- Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
- https://xerces.apache.org/xerces-c/
- Versions:
  - 3.2.4-GCCcore-12.3.0
  - 3.2.5-GCCcore-13.2.0
  * 3.2.5-GCCcore-13.3.0
Xvfb
- Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
- https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml
- Versions:
  - 1.20.11-GCCcore-10.3.0
  - 1.20.13-GCCcore-11.2.0
  - 21.1.3-GCCcore-11.3.0
  - 21.1.8-GCCcore-12.3.0
  - 21.1.9-GCCcore-13.2.0
  * 21.1.14-GCCcore-13.3.0
Yasm
- Yasm: Complete rewrite of the NASM assembler with BSD license
- https://www.tortall.net/projects/yasm/
- Versions:
  - 1.3.0-GCCcore-11.3.0
  - 1.3.0-GCCcore-12.2.0
  - 1.3.0-GCCcore-12.3.0
  - 1.3.0-GCCcore-13.2.0
  - 1.3.0-GCCcore-13.3.0
  * 1.3.0-GCCcore-14.2.0
Z3
- Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
- https://github.com/Z3Prover/z3
- Versions:
  - 4.10.2-GCCcore-11.3.0-Python-3.10.4
  - 4.12.2-GCCcore-12.3.0
  - 4.13.0-GCCcore-13.2.0
  - 4.13.0-GCCcore-13.3.0
  * 4.13.4-GCCcore-14.2.0
ZeroMQ
- ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
- https://www.zeromq.org/
- Versions:
  - 4.3.4-GCCcore-10.3.0
  - 4.3.4-GCCcore-11.3.0
  - 4.3.4-GCCcore-12.3.0
  - 4.3.5-GCCcore-13.2.0
  - 4.3.5-GCCcore-13.3.0
  * 4.3.5-GCCcore-14.2.0
Zip
- Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality
- http://www.info-zip.org/Zip.html
- Versions:
  - 3.0-GCCcore-11.3.0
  - 3.0-GCCcore-12.3.0
  * 3.0-GCCcore-13.3.0
alsa-lib
- The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.
- https://www.alsa-project.org
- Versions:
  - 1.2.8-GCCcore-11.3.0
  - 1.2.9-GCCcore-12.3.0
  * 1.2.11-GCCcore-13.3.0
ant
- Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.
- https://ant.apache.org/
- Versions:
  - 1.10.8-Java-11
  - 1.10.11-Java-11
  - 1.10.12-Java-17
  - 1.10.14-Java-11
  * 1.10.14-Java-21
archspec
- A library for detecting, labeling, and reasoning about microarchitectures
- https://github.com/archspec/archspec
- Versions:
  - 0.2.1-GCCcore-12.3.0
  - 0.2.2-GCCcore-13.2.0
  - 0.2.5-GCCcore-12.3.0
  * 0.2.5-GCCcore-13.3.0
arpack-ng
- ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
- https://github.com/opencollab/arpack-ng
- Versions:
  - 3.8.0-foss-2021b
  - 3.9.0-foss-2023a
  - 3.9.0-foss-2023b
  - 3.9.1-foss-2023b
  * 3.9.1-foss-2024a
arrow-R
- R interface to the Apache Arrow C++ library
- https://cran.r-project.org/web/packages/arrow
- Versions:
  - 8.0.0-foss-2022a-R-4.2.1
  - 14.0.1-foss-2023a-R-4.3.2
  * 17.0.0.1-foss-2024a-R-4.4.2
assimp
- Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
- https://github.com/assimp/assimp
- Versions:
  - 5.3.1-GCCcore-13.2.0
  - 5.4.3-GCCcore-13.3.0
  * 6.0.2-GCCcore-14.2.0
at-spi2-atk
- AT-SPI 2 toolkit bridge
- https://wiki.gnome.org/Accessibility
- Versions:
  - 2.38.0-GCCcore-11.2.0
  - 2.38.0-GCCcore-12.2.0
  - 2.38.0-GCCcore-12.3.0
  - 2.38.0-GCCcore-13.2.0
  * 2.38.0-GCCcore-13.3.0
at-spi2-core
- Assistive Technology Service Provider Interface.
- https://wiki.gnome.org/Accessibility
- Versions:
  - 2.40.3-GCCcore-11.2.0
  - 2.46.0-GCCcore-12.2.0
  - 2.49.91-GCCcore-12.3.0
  - 2.50.0-GCCcore-13.2.0
  * 2.54.0-GCCcore-13.3.0
attr
- Commands for Manipulating Filesystem Extended Attributes
- https://savannah.nongnu.org/projects/attr
- Versions:
  - 2.5.1-GCCcore-11.3.0
  - 2.5.1-GCCcore-12.3.0
  * 2.5.2-GCCcore-14.2.0
attrdict3
- AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes.
- https://github.com/pirofti/AttrDict3
- Versions:
  - 2.0.2-GCCcore-11.2.0
  * 2.0.2-GCCcore-12.3.0
bcrypt
- Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt)
- https://github.com/pyca/bcrypt/
- Versions:
  - 4.0.1-GCCcore-12.3.0
  * 4.3.0-GCCcore-13.3.0
binutils
- binutils: GNU binary utilities
- https://directory.fsf.org/project/binutils/
- Versions:
  - 2.31.1
  - 2.32
  - 2.34-GCCcore-9.3.0
  - 2.34
  - 2.35-GCCcore-10.2.0
  - 2.35
  - 2.36.1-GCCcore-10.3.0
  - 2.36.1
  - 2.37-GCCcore-11.2.0
  - 2.37
  - 2.38-GCCcore-11.3.0
  - 2.38
  - 2.39-GCCcore-12.2.0
  - 2.39
  - 2.40-GCCcore-12.3.0
  - 2.40-GCCcore-13.2.0
  - 2.40
  - 2.42-GCCcore-13.3.0
  - 2.42-GCCcore-14.1.0
  - 2.42-GCCcore-14.2.0
  - 2.42
  - 2.44-GCCcore-14.3.0
  * 2.44
biom-format
- The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project.
- https://biom-format.org
- Versions:
  - 2.1.15-foss-2023a
  * 2.1.16-foss-2024a
bliss
- Bliss is an open-source tool for computing canonical labelings and automorphism groups of graphs.
- https://users.aalto.fi/~tjunttil/bliss/
- Versions:
  * 0.77-GCC-13.2.0
bokeh
- Statistical and novel interactive HTML plots for Python
- https://github.com/bokeh/bokeh
- Versions:
  - 2.4.3-foss-2022a
  - 3.2.2-foss-2023a
  * 3.6.0-gfbf-2024a
bwidget
- The BWidget Toolkit is a high-level Widget Set for Tcl/Tk built using native Tcl/Tk 8.x namespaces.
- https://core.tcl-lang.org/bwidget/home
- Versions:
  - 1.9.15-GCCcore-11.3.0
  * 1.10.1-GCCcore-13.3.0
bzip2
- bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
- https://sourceware.org/bzip2
- Versions:
  - 1.0.8-GCCcore-9.3.0
  - 1.0.8-GCCcore-10.2.0
  - 1.0.8-GCCcore-10.3.0
  - 1.0.8-GCCcore-11.2.0
  - 1.0.8-GCCcore-11.3.0
  - 1.0.8-GCCcore-12.2.0
  - 1.0.8-GCCcore-12.3.0
  - 1.0.8-GCCcore-13.2.0
  - 1.0.8-GCCcore-13.3.0
  - 1.0.8-GCCcore-14.2.0
  * 1.0.8-GCCcore-14.3.0
c-ares
- c-ares is a C library for asynchronous DNS requests (including name resolves)
- https://c-ares.haxx.se
- Versions:
  - 1.18.1-GCCcore-11.2.0
  - 1.19.1-GCCcore-12.3.0
  * 1.34.5-GCCcore-13.3.0
cURL
- libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
- https://curl.haxx.se
- Versions:
  - 7.69.1-GCCcore-9.3.0
  - 7.72.0-GCCcore-10.2.0
  - 7.76.0-GCCcore-10.3.0
  - 7.78.0-GCCcore-11.2.0
  - 7.83.0-GCCcore-11.3.0
  - 7.86.0-GCCcore-12.2.0
  - 8.0.1-GCCcore-12.3.0
  - 8.3.0-GCCcore-13.2.0
  - 8.7.1-GCCcore-13.3.0
  - 8.11.1-GCCcore-14.2.0
  * 8.14.1-GCCcore-14.3.0
cairo
- Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
- https://cairographics.org
- Versions:
  - 1.16.0-GCCcore-10.3.0
  - 1.16.0-GCCcore-11.2.0
  - 1.17.4-GCCcore-11.3.0
  - 1.17.4-GCCcore-12.2.0
  - 1.17.8-GCCcore-12.3.0
  - 1.18.0-GCCcore-13.2.0
  - 1.18.0-GCCcore-13.3.0
  * 1.18.4-GCCcore-14.2.0
ccache
- Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again
- https://ccache.dev/
- Versions:
  - 4.6.1-GCCcore-11.2.0
  - 4.9-GCCcore-12.3.0
  * 4.10.2-GCCcore-13.3.0
cddlib
- An efficient implementation of the Double Description Method
- https://github.com/cddlib/cddlib
- Versions:
  * 0.94m-GCCcore-13.2.0
cffi
- C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
- https://cffi.readthedocs.io/en/latest/
- Versions:
  - 1.15.1-GCCcore-12.3.0
  - 1.15.1-GCCcore-13.2.0
  - 1.16.0-GCCcore-13.3.0
  * 1.17.1-GCCcore-14.2.0
cliquer
- Cliquer is a set of C routines for finding cliques in an arbitrary weighted graph. It uses an exact branch-and-bound algorithm developed by Patric Ostergard. It is designed with the aim of being efficient while still being flexible and easy to use.
- https://users.aalto.fi/~pat/cliquer.html
- Versions:
  * 1.21-GCCcore-13.2.0
code-server
- Run VS Code on any machine anywhere and access it in the browser.
- https://github.com/coder/code-server
- Versions:
  - 4.89.1
  - 4.90.2
  * 4.100.2
coverage
- Coverage.py is a tool for measuring code coverage of Python programs. It monitors your program, noting which parts of the code have been executed, then analyzes the source to identify code that could have been executed but was not.
- https://coverage.readthedocs.io
- Versions:
  - 7.2.3-GCCcore-12.3.0
  * 7.4.4-GCCcore-13.2.0
coxeter
- A library for the study of combinatorial aspects of Coxeter group theory
- https://github.com/tscrim/coxeter
- Versions:
  * 20180226-GCCcore-13.2.0
cpio
- The cpio package contains tools for archiving.
- https://savannah.gnu.org/projects/cpio/
- Versions:
  - 2.14-GCCcore-11.3.0
  - 2.15-GCCcore-12.3.0
  * 2.15-GCCcore-13.3.0
cppy
- A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
- https://github.com/nucleic/cppy
- Versions:
  - 1.1.0-GCCcore-10.3.0
  - 1.1.0-GCCcore-11.2.0
  - 1.2.1-GCCcore-11.3.0
  - 1.2.1-GCCcore-12.2.0
  - 1.2.1-GCCcore-12.3.0
  - 1.2.1-GCCcore-13.2.0
  * 1.2.1-GCCcore-13.3.0
cppyy
- cppyy is an automatic, run-time, Python-C++ bindings generator, for calling C++ from Python and Python from C++.
- https://cppyy.readthedocs.io
- Versions:
  * 3.1.2-GCCcore-13.2.0
cryptography
- cryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
- https://github.com/pyca/cryptography
- Versions:
  - 41.0.1-GCCcore-12.3.0
  - 41.0.5-GCCcore-13.2.0
  - 42.0.8-GCCcore-13.3.0
  * 44.0.2-GCCcore-14.2.0
cuDNN
- The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.
- https://developer.nvidia.com/cudnn
- Versions:
  - 8.2.2.26-CUDA-11.4.1
  - 8.8.0.121-CUDA-12.0.0
  - 8.9.2.26-CUDA-12.1.1
  * 9.5.0.50-CUDA-12.6.0
cuSPARSELt
- NVIDIA cuSPARSELt is a high-performance CUDA library dedicated to general matrix-matrix operations in which at least one operand is a sparse matrix
- https://docs.nvidia.com/cuda/cusparselt/index.html
- Versions:
  * 0.6.0.6-CUDA-12.1.1
cuTENSOR
- The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations.
- https://developer.nvidia.com/cutensor
- Versions:
  - 1.6.1.5-CUDA-11.4.1
  - 1.7.0.1-CUDA-12.0.0
  - 2.0.1.2-CUDA-12.1.1
  * 2.0.2.5-CUDA-12.6.0
cutadapt
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
- https://opensource.scilifelab.se/projects/cutadapt/
- Versions:
  - 4.2-GCCcore-11.3.0
  - 4.9-GCCcore-12.3.0
  * 5.0-GCCcore-13.2.0
cysignals
- The cysignals package provides mechanisms to handle interrupts (and other signals and errors) in Cython code.
- https://pypi.org/project/cysignals/
- Versions:
  * 1.11.4-GCCcore-13.2.0
dbus-glib
- D-Bus is a message bus system, a simple way for applications to talk to one another.
- https://dbus.freedesktop.org/doc/dbus-glib
- Versions:
  - 0.112-GCCcore-11.2.0
  * 0.112-GCCcore-12.3.0
dill
- dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.
- https://pypi.org/project/dill/
- Versions:
  - 0.3.4-GCCcore-10.3.0
  - 0.3.6-GCCcore-11.3.0
  - 0.3.7-GCCcore-12.3.0
  * 0.3.9-GCCcore-13.3.0
double-conversion
- Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
- https://github.com/google/double-conversion
- Versions:
  - 3.1.5-GCCcore-10.2.0
  - 3.1.5-GCCcore-11.2.0
  - 3.2.0-GCCcore-11.3.0
  - 3.2.1-GCCcore-12.2.0
  - 3.3.0-GCCcore-12.3.0
  - 3.3.0-GCCcore-13.2.0
  - 3.3.0-GCCcore-13.3.0
  * 3.3.1-GCCcore-14.2.0
draco
- "Draco is a library for compressing and decompressing 3D geometric meshes and point clouds. It is intended to improve the storage and transmission of 3D graphics.
- https://github.com/google/draco/
- Versions:
  * 1.5.7-foss-2023a
eclib
- The eclib package includes mwrank (for 2-descent on elliptic curves over Q) and modular symbol code used to create the elliptic curve database.
- https://github.com/JohnCremona/eclib
- Versions:
  * 20240408-GCC-13.2.0
elfutils
- The elfutils project provides libraries and tools for ELF files and DWARF data.
- https://elfutils.org/
- Versions:
  - 0.189-GCCcore-12.3.0
  - 0.190-GCCcore-13.2.0
  - 0.191-GCCcore-13.3.0
  * 0.193-GCCcore-14.2.0
enchant-2
- Enchant aims to provide a simple but comprehensive abstraction for dealing with different spell checking libraries in a consistent way. A client, such as a text editor or word processor, need not know anything about a specific spell-checker, and since all back-ends are plugins, new spell-checkers can be added without needing any change to the program using Enchant.
- http://rrthomas.github.io/enchant/
- Versions:
  - 2.3.3-GCCcore-11.2.0
  * 2.6.5-GCCcore-12.3.0
exiv2
- Exiv2 is a C++ library and a command line utility to manage image metadata. It provides fast and easy read and write access to the Exif, IPTC and XMP metadata of digital images in various formats. Exiv2 is available as free software and with a commercial license, and is used in many projects.
- http://www.exiv2.org
- Versions:
  - 0.27.5-GCCcore-11.2.0
  - 0.28.0-GCCcore-12.3.0
  * 0.28.3-GCCcore-13.3.0
expat
- Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
- https://libexpat.github.io
- Versions:
  - 2.2.9-GCCcore-9.3.0
  - 2.2.9-GCCcore-10.2.0
  - 2.2.9-GCCcore-10.3.0
  - 2.4.1-GCCcore-11.2.0
  - 2.4.8-GCCcore-11.3.0
  - 2.4.9-GCCcore-12.2.0
  - 2.5.0-GCCcore-12.3.0
  - 2.5.0-GCCcore-13.2.0
  - 2.6.2-GCCcore-13.3.0
  * 2.6.4-GCCcore-14.2.0
expecttest
- This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.
- https://github.com/ezyang/expecttest
- Versions:
  - 0.1.3-GCCcore-11.3.0
  - 0.1.3-GCCcore-12.2.0
  - 0.1.5-GCCcore-12.3.0
  - 0.2.1-GCCcore-13.2.0
  * 0.2.1-GCCcore-13.3.0
ffnvcodec
- FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
- https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git
- Versions:
  - 11.1.5.2
  - 12.0.16.0
  - 12.1.14.0
  - 12.2.72.0
  * 13.0.19.0
file
- The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains.
- https://www.darwinsys.com/file/
- Versions:
  - 5.43-GCCcore-12.3.0
  * 5.46-GCCcore-13.3.0
flatbuffers
- FlatBuffers: Memory Efficient Serialization Library
- https://github.com/google/flatbuffers/
- Versions:
  - 2.0.7-GCCcore-11.3.0
  - 23.5.26-GCCcore-12.3.0
  * 24.3.25-GCCcore-13.3.0
flatbuffers-python
- Python Flatbuffers runtime library.
- https://github.com/google/flatbuffers/
- Versions:
  - 2.0-GCCcore-11.3.0
  - 23.5.26-GCCcore-12.3.0
  * 24.3.25-GCCcore-13.3.0
flex
- Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
- http://flex.sourceforge.net/
- Versions:
  - 2.6.4-GCCcore-9.3.0
  - 2.6.4-GCCcore-10.2.0
  - 2.6.4-GCCcore-10.3.0
  - 2.6.4-GCCcore-11.2.0
  - 2.6.4-GCCcore-11.3.0
  - 2.6.4-GCCcore-12.2.0
  - 2.6.4-GCCcore-12.3.0
  - 2.6.4-GCCcore-13.2.0
  - 2.6.4-GCCcore-13.3.0
  - 2.6.4-GCCcore-14.1.0
  - 2.6.4-GCCcore-14.2.0
  - 2.6.4-GCCcore-14.3.0
  - 2.6.4-GCCcore-15.1.0
  * 2.6.4
flit
- A simple packaging tool for simple packages.
- https://github.com/pypa/flit
- Versions:
  - 3.9.0-GCCcore-12.3.0
  - 3.9.0-GCCcore-13.2.0
  - 3.9.0-GCCcore-13.3.0
  * 3.10.1-GCCcore-14.2.0
flook
- The fortran-Lua-hook library.
- https://github.com/ElectronicStructureLibrary/flook
- Versions:
  - 0.8.4-GCC-12.3.0
  * 0.8.4-GCC-13.3.0
fmt
- fmt (formerly cppformat) is an open-source formatting library.
- http://fmtlib.net/
- Versions:
  - 10.2.0-GCCcore-13.2.0
  * 11.2.0-GCCcore-14.2.0
fontconfig
- Fontconfig is a library designed to provide system-wide font configuration, customization and application access.
- https://www.freedesktop.org/wiki/Software/fontconfig/
- Versions:
  - 2.13.92-GCCcore-10.2.0
  - 2.13.93-GCCcore-10.3.0
  - 2.13.94-GCCcore-11.2.0
  - 2.14.0-GCCcore-11.3.0
  - 2.14.1-GCCcore-12.2.0
  - 2.14.2-GCCcore-12.3.0
  - 2.14.2-GCCcore-13.2.0
  - 2.15.0-GCCcore-13.3.0
  * 2.16.2-GCCcore-14.2.0
fonttools
- fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.
- https://python-markdown.github.io/
- Versions:
  - 4.53.1-GCCcore-13.3.0
  * 4.58.4-GCCcore-14.2.0
foss
- GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
- https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain
- Versions:
  - 2020a
  - 2020b
  - 2021a
  - 2021b
  - 2022a
  - 2022b
  - 2023a
  - 2023b
  * 2024a
fosscuda
- GCC based compiler toolchain __with CUDA support__, and including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
- (none)
- Versions:
  * 2020b
fplll
- fplll contains implementations of several lattice algorithms. The implementation relies on floating-point orthogonalization, and the 1982 paper from Lenstra, Lenstra Jr. and Lovasz (LLL) is central to the code, hence the name.
- https://github.com/fplll/fplll
- Versions:
  * 5.4.5-GCCcore-13.2.0
fpylll
- A Python wrapper for fplll.
- https://pypi.org/project/fpylll
- Versions:
  * 0.6.1-foss-2023b
freeglut
- freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.
- http://freeglut.sourceforge.net/
- Versions:
  - 3.2.1-GCCcore-11.2.0
  - 3.4.0-GCCcore-12.3.0
  * 3.6.0-GCCcore-13.3.0
freetype
- FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
- https://www.freetype.org
- Versions:
  - 2.10.1-GCCcore-9.3.0
  - 2.10.3-GCCcore-10.2.0
  - 2.10.4-GCCcore-10.3.0
  - 2.11.0-GCCcore-11.2.0
  - 2.12.1-GCCcore-11.3.0
  - 2.12.1-GCCcore-12.2.0
  - 2.13.0-GCCcore-12.3.0
  - 2.13.2-GCCcore-13.2.0
  - 2.13.2-GCCcore-13.3.0
  * 2.13.3-GCCcore-14.2.0
gap
- GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory.
- https://www.gap-system.org
- Versions:
  * 4.13.0-foss-2023b
gawk
- The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code.
- https://www.gnu.org/software/gawk
- Versions:
  - 5.1.1-GCC-11.2.0
  * 5.3.0-GCC-13.2.0
gc
- The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.
- https://hboehm.info/gc/
- Versions:
  - 7.6.12-GCCcore-9.3.0
  - 8.2.0-GCCcore-11.2.0
  - 8.2.4-GCCcore-12.3.0
  - 8.2.6-GCCcore-13.2.0
  * 8.2.6-GCCcore-13.3.0
gcccuda
- GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit.
- (none)
- Versions:
  * 2020b
gengetopt
- Gengetopt is a tool to write command line option parsing code for C programs.
- https://www.gnu.org/software/gengetopt/gengetopt.html
- Versions:
  * 2.23-GCCcore-13.2.0
gettext
- GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
- https://www.gnu.org/software/gettext/
- Versions:
  - 0.20.1-GCCcore-9.3.0
  - 0.20.1
  - 0.21-GCCcore-10.2.0
  - 0.21-GCCcore-10.3.0
  - 0.21-GCCcore-11.2.0
  - 0.21-GCCcore-11.3.0
  - 0.21
  - 0.21.1-GCCcore-12.2.0
  - 0.21.1-GCCcore-12.3.0
  - 0.21.1
  - 0.22-GCCcore-13.2.0
  - 0.22
  - 0.22.5-GCCcore-13.3.0
  - 0.22.5
  - 0.24-GCCcore-14.2.0
  - 0.25-GCCcore-14.3.0
  * 0.25
gfbf
- GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
- (none)
- Versions:
  - 2022b
  - 2023a
  - 2023b
  * 2024a
gffutils
- Gffutils is a Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations.
- https://github.com/daler/gffutils
- Versions:
  - 0.13-foss-2023a
  * 0.13-foss-2023b
giac
- Giac is a C++ library, it is the CAS computing kernel. It may be used inside other C++ programs, and also Python, Java and Javascript programs.
- https://www-fourier.ujf-grenoble.fr/~parisse/giac.html
- Versions:
  * 1.9.0-99-gfbf-2023b
giflib
- giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
- http://giflib.sourceforge.net/
- Versions:
  - 5.2.1-GCCcore-11.2.0
  - 5.2.1-GCCcore-11.3.0
  - 5.2.1-GCCcore-12.3.0
  - 5.2.1-GCCcore-13.2.0
  * 5.2.1-GCCcore-13.3.0
git
- Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
- https://git-scm.com
- Versions:
  - 2.23.0-GCCcore-9.3.0-nodocs
  - 2.28.0-GCCcore-10.2.0-nodocs
  - 2.32.0-GCCcore-10.3.0-nodocs
  - 2.33.1-GCCcore-11.2.0-nodocs
  - 2.36.0-GCCcore-11.3.0-nodocs
  - 2.38.1-GCCcore-12.2.0-nodocs
  - 2.41.0-GCCcore-12.3.0-nodocs
  - 2.42.0-GCCcore-13.2.0
  * 2.45.1-GCCcore-13.3.0
git-lfs
- Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com
- https://git-lfs.github.com
- Versions:
  - 3.5.1
  * 3.6.1
glew
- The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform.
- https://github.com/nigels-com/glew
- Versions:
  - 2.2.0-GCCcore-11.2.0-egl
  * 2.2.0-GCCcore-12.3.0-osmesa
glib-networking
- Network extensions for GLib
- https://gitlab.gnome.org/GNOME/glib-networking
- Versions:
  - 2.72.1-GCCcore-11.2.0
  * 2.72.1-GCCcore-12.3.0
gmpy2
- GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x
- https://github.com/aleaxit/gmpy
- Versions:
  - 2.1.0b5-GCC-10.3.0
  - 2.1.2-GCC-11.3.0
  - 2.1.5-GCC-12.3.0
  * 2.1.5-GCC-13.2.0
gnupg-bundle
- GnuPG — The Universal Crypto Engine
- https://www.gnupg.org/software/index.html
- Versions:
  * 20240306-GCCcore-13.2.0
gnuplot
- Portable interactive, function plotting utility
- http://gnuplot.sourceforge.net
- Versions:
  - 5.4.2-GCCcore-11.2.0
  * 5.4.8-GCCcore-12.3.0
gompi
- GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
- (none)
- Versions:
  - 2020a
  - 2020b
  - 2021a
  - 2021b
  - 2022a
  - 2022b
  - 2023a
  - 2023b
  - 2024a
  * 2025.02
gompic
- GNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, including OpenMPI for MPI support with CUDA features enabled.
- (none)
- Versions:
  * 2020b
googletest
- Google's framework for writing C++ tests on a variety of platforms
- https://github.com/google/googletest
- Versions:
  - 1.11.0-GCCcore-11.2.0
  - 1.11.0-GCCcore-11.3.0
  - 1.13.0-GCCcore-12.3.0
  - 1.14.0-GCCcore-13.2.0
  * 1.15.2-GCCcore-13.3.0
gperf
- GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
- https://www.gnu.org/software/gperf/
- Versions:
  - 3.1-GCCcore-10.2.0
  - 3.1-GCCcore-10.3.0
  - 3.1-GCCcore-11.2.0
  - 3.1-GCCcore-11.3.0
  - 3.1-GCCcore-12.2.0
  - 3.1-GCCcore-12.3.0
  - 3.1-GCCcore-13.2.0
  - 3.1-GCCcore-13.3.0
  * 3.3-GCCcore-14.2.0
graphite2
- Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
- https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home
- Versions:
  - 1.3.14-GCCcore-11.2.0
  - 1.3.14-GCCcore-11.3.0
  - 1.3.14-GCCcore-12.2.0
  - 1.3.14-GCCcore-12.3.0
  - 1.3.14-GCCcore-13.2.0
  * 1.3.14-GCCcore-13.3.0
groff
- Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
- https://www.gnu.org/software/groff
- Versions:
  - 1.22.4-GCCcore-9.3.0
  - 1.22.4-GCCcore-10.2.0
  - 1.22.4-GCCcore-10.3.0
  - 1.22.4-GCCcore-11.2.0
  - 1.22.4-GCCcore-11.3.0
  - 1.22.4-GCCcore-12.2.0
  - 1.22.4-GCCcore-12.3.0
  - 1.23.0-GCCcore-13.2.0
  - 1.23.0-GCCcore-13.3.0
  * 1.23.0-GCCcore-14.2.0
grpcio
- gRPC is a modern, open source, high-performance remote procedure call (RPC) framework that can run anywhere. gRPC enables client and server applications to communicate transparently, and simplifies the building of connected systems.
- https://grpc.io/
- Versions:
  - 1.57.0-GCCcore-12.3.0
  * 1.67.1-GCCcore-13.2.0
gzip
- gzip (GNU zip) is a popular data compression program as a replacement for compress
- https://www.gnu.org/software/gzip/
- Versions:
  - 1.10-GCCcore-9.3.0
  - 1.10-GCCcore-10.2.0
  - 1.10-GCCcore-10.3.0
  - 1.10-GCCcore-11.2.0
  - 1.12-GCCcore-11.3.0
  - 1.12-GCCcore-12.2.0
  - 1.12-GCCcore-12.3.0
  - 1.13-GCCcore-13.2.0
  - 1.13-GCCcore-13.3.0
  * 1.13-GCCcore-14.2.0
h5py
- HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
- https://www.h5py.org/
- Versions:
  - 3.2.1-foss-2021a
  - 3.7.0-foss-2022a
  - 3.8.0-foss-2022b
  - 3.9.0-foss-2023a
  * 3.12.1-foss-2024a
hatch-jupyter-builder
- Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets.
- https://hatch-jupyter-builder.readthedocs.io
- Versions:
  - 0.9.1-GCCcore-13.2.0
  - 0.9.1-GCCcore-13.3.0
  * 0.9.1-GCCcore-14.2.0
hatchling
- Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
- https://hatch.pypa.io
- Versions:
  - 1.18.0-GCCcore-12.3.0
  - 1.18.0-GCCcore-13.2.0
  - 1.24.2-GCCcore-13.3.0
  * 1.27.0-GCCcore-14.2.0
help2man
- help2man produces simple manual pages from the '--help' and '--version' output of other commands.
- https://www.gnu.org/software/help2man/
- Versions:
  - 1.47.12-GCCcore-9.3.0
  - 1.47.16-GCCcore-10.2.0
  - 1.48.3-GCCcore-10.3.0
  - 1.48.3-GCCcore-11.2.0
  - 1.49.2-GCCcore-11.3.0
  - 1.49.2-GCCcore-12.2.0
  - 1.49.3-GCCcore-12.3.0
  - 1.49.3-GCCcore-13.2.0
  - 1.49.3-GCCcore-13.3.0
  - 1.49.3-GCCcore-14.1.0
  - 1.49.3-GCCcore-14.2.0
  - 1.49.3-GCCcore-14.3.0
  * 1.49.3-GCCcore-15.1.0
hevea
- A quite complete and fast LATEX to HTML translator
- http://pauillac.inria.fr/~maranget/hevea/
- Versions:
  * 2.36-GCC-13.2.0
hiredis
- Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.
- https://github.com/redis/hiredis
- Versions:
  - 1.0.2-GCCcore-11.2.0
  - 1.2.0-GCCcore-12.3.0
  * 1.2.0-GCCcore-13.3.0
hunspell
- Hunspell is a spell checker and morphological analyzer library and program designed for languages with rich morphology and complex word compounding or character encoding.
- https://hunspell.github.io/
- Versions:
  - 1.7.1-GCCcore-11.2.0
  * 1.7.2-GCCcore-12.3.0
hwloc
- The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
- https://www.open-mpi.org/projects/hwloc/
- Versions:
  - 2.2.0-GCCcore-9.3.0
  - 2.2.0-GCCcore-10.2.0
  - 2.4.1-GCCcore-10.3.0
  - 2.5.0-GCCcore-11.2.0
  - 2.7.1-GCCcore-11.3.0
  - 2.8.0-GCCcore-12.2.0
  - 2.9.1-GCCcore-12.3.0
  - 2.9.2-GCCcore-13.2.0
  - 2.10.0-GCCcore-13.3.0
  * 2.11.2-GCCcore-14.2.0
hypothesis
- Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
- https://github.com/HypothesisWorks/hypothesis
- Versions:
  - 4.57.1-GCCcore-12.3.0-Python-2.7.18
  - 6.13.1-GCCcore-10.3.0
  - 6.14.6-GCCcore-11.2.0
  - 6.46.7-GCCcore-11.3.0
  - 6.68.2-GCCcore-12.2.0
  - 6.82.0-GCCcore-12.3.0
  - 6.90.0-GCCcore-13.2.0
  * 6.103.1-GCCcore-13.3.0
igraph
- igraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use. igraph is open source and free. igraph can be programmed in R, Python and C/C++.
- https://igraph.org
- Versions:
  * 0.10.12-foss-2023b
iimpi
- Intel C/C++ and Fortran compilers, alongside Intel MPI.
- https://software.intel.com/parallel-studio-xe
- Versions:
  - 2023a
  * 2024a
imkl
- Intel oneAPI Math Kernel Library
- https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html
- Versions:
  - 2023.1.0
  * 2024.2.0
imkl-FFTW
- FFTW interfaces using Intel oneAPI Math Kernel Library
- https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html
- Versions:
  - 2023.1.0-iimpi-2023a
  * 2024.2.0-iimpi-2024a
impi
- Intel MPI Library, compatible with MPICH ABI
- https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html
- Versions:
  - 2021.9.0-intel-compilers-2023.1.0
  * 2021.13.0-intel-compilers-2024.2.0
inih
- Direct Rendering Manager runtime library.
- https://dri.freedesktop.org
- Versions:
  - 57-GCCcore-12.3.0
  * 58-GCCcore-13.3.0
intel
- Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
- https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain
- Versions:
  - 2023a
  * 2024a
intel-compilers
- Intel C, C++ & Fortran compilers (classic and oneAPI)
- https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html
- Versions:
  - 2023.1.0
  * 2024.2.0
intltool
- intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
- https://freedesktop.org/wiki/Software/intltool/
- Versions:
  - 0.51.0-GCCcore-9.3.0
  - 0.51.0-GCCcore-10.2.0
  - 0.51.0-GCCcore-10.3.0
  - 0.51.0-GCCcore-11.2.0
  - 0.51.0-GCCcore-11.3.0
  - 0.51.0-GCCcore-12.2.0
  - 0.51.0-GCCcore-12.3.0
  - 0.51.0-GCCcore-13.2.0
  - 0.51.0-GCCcore-13.3.0
  * 0.51.0-GCCcore-14.2.0
jbigkit
- JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
- https://www.cl.cam.ac.uk/~mgk25/jbigkit/
- Versions:
  - 2.1-GCCcore-10.3.0
  - 2.1-GCCcore-11.2.0
  - 2.1-GCCcore-11.3.0
  - 2.1-GCCcore-12.2.0
  - 2.1-GCCcore-12.3.0
  - 2.1-GCCcore-13.2.0
  * 2.1-GCCcore-13.3.0
jedi
- Jedi - an awesome autocompletion, static analysis and refactoring library for Python.
- https://github.com/davidhalter/jedi
- Versions:
  - 0.19.0-GCCcore-12.3.0
  - 0.19.1-GCCcore-13.2.0
  * 0.19.1-GCCcore-13.3.0
jemalloc
- jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.
- http://jemalloc.net
- Versions:
  - 5.2.1-GCCcore-11.2.0
  * 5.3.0-GCCcore-12.3.0
json-c
- JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
- https://github.com/json-c/json-c
- Versions:
  - 0.16-GCCcore-12.3.0
  - 0.17-GCCcore-13.2.0
  * 0.17-GCCcore-13.3.0
json-fortran
- JSON-Fortran: A Modern Fortran JSON API
- https://github.com/jacobwilliams/json-fortran
- Versions:
  * 9.0.2-GCC-12.3.0
jupyter-c-kernel
- https://github.com/brendan-rius/jupyter-c-kernel/tree/master
- Versions:
  * 2.0-foss-2022a-Python-3.10.4
jupyter-server
- The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.
- https://jupyter.org/
- Versions:
  - 1.21.0-GCCcore-11.3.0
  - 2.14.0-GCCcore-13.2.0
  * 2.14.2-GCCcore-13.3.0
kim-api
- Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.
- https://openkim.org/
- Versions:
  - 2.3.0-GCC-12.3.0
  * 2.3.0-GCC-13.2.0
lcalc
- Lcalc is a package for working with L-functions.
- https://gitlab.com/sagemath/lcalc
- Versions:
  * 2.0.5-GCCcore-13.2.0
libGLU
- The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
- https://mesa.freedesktop.org/archive/glu/
- Versions:
  - 9.0.1-GCCcore-10.2.0
  - 9.0.1-GCCcore-10.3.0
  - 9.0.2-GCCcore-11.2.0
  - 9.0.2-GCCcore-11.3.0
  - 9.0.2-GCCcore-12.2.0
  - 9.0.3-GCCcore-12.3.0
  - 9.0.3-GCCcore-13.2.0
  * 9.0.3-GCCcore-13.3.0
libGridXC
- A library to compute the exchange and correlation energy and potential in spherical (i.e. atoms) or periodic systems.
- https://gitlab.com/siesta-project/libraries/libgridxc
- Versions:
  * 2.0.2-gompi-2023a
libPSML
- A library to handle pseudopotentials in PSML format
- https://gitlab.com/siesta-project/libraries/libpsml
- Versions:
  * 2.1.0-GCC-12.3.0
libaec
- Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). The library achieves best results for low entropy data as often encountered in space imaging instrument data or numerical model output from weather or climate simulations. While floating point representations are not directly supported, they can also be efficiently coded by grouping exponents and mantissa.
- https://gitlab.dkrz.de/k202009/libaec
- Versions:
  - 1.0.6-GCCcore-11.3.0
  * 1.0.6-GCCcore-12.3.0
libaio
- Asynchronous input/output library that uses the kernels native interface.
- https://pagure.io/libaio
- Versions:
  * 0.3.113-GCCcore-13.3.0
libarchive
- Multi-format archive and compression library
- https://www.libarchive.org/
- Versions:
  - 3.4.3-GCCcore-10.2.0
  - 3.5.1-GCCcore-10.3.0
  - 3.5.1-GCCcore-11.2.0
  - 3.6.1-GCCcore-11.3.0
  - 3.6.1-GCCcore-12.2.0
  - 3.6.2-GCCcore-12.3.0
  - 3.7.2-GCCcore-13.2.0
  - 3.7.4-GCCcore-13.3.0
  * 3.7.7-GCCcore-14.2.0
libavif
- This library aims to be a friendly, portable C implementation of the AV1 Image File Format, as described here: https://aomediacodec.github.io/av1-avif/
- https://github.com/AOMediaCodec/libavif
- Versions:
  * 1.0.4-GCCcore-12.3.0
libbraiding
- This is a project to expose the functionalitis of the Braiding program as a shared library. The original goal is to include it as a component of SageMath, but it can be used in any other c++ program.
- https://github.com/miguelmarco/libbraiding
- Versions:
  * 1.2-GCCcore-13.2.0
libcerf
- libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
- https://jugit.fz-juelich.de/mlz/libcerf
- Versions:
  - 1.17-GCCcore-11.2.0
  * 2.3-GCCcore-12.3.0
libcint
- libcint is an open source library for analytical Gaussian integrals.
- https://github.com/sunqm/libcint
- Versions:
  - 5.4.0-gfbf-2023a
  * 5.5.0-gfbf-2022b
libdeflate
- Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.
- https://github.com/ebiggers/libdeflate
- Versions:
  - 1.10-GCCcore-11.3.0
  - 1.15-GCCcore-12.2.0
  - 1.18-GCCcore-12.3.0
  - 1.19-GCCcore-13.2.0
  * 1.20-GCCcore-13.3.0
libdrm
- Direct Rendering Manager runtime library.
- https://dri.freedesktop.org
- Versions:
  - 2.4.102-GCCcore-10.2.0
  - 2.4.106-GCCcore-10.3.0
  - 2.4.107-GCCcore-11.2.0
  - 2.4.110-GCCcore-11.3.0
  - 2.4.114-GCCcore-12.2.0
  - 2.4.115-GCCcore-12.3.0
  - 2.4.117-GCCcore-13.2.0
  * 2.4.122-GCCcore-13.3.0
libepoxy
- Epoxy is a library for handling OpenGL function pointer management for you
- https://github.com/anholt/libepoxy
- Versions:
  - 1.5.8-GCCcore-11.2.0
  - 1.5.10-GCCcore-12.2.0
  - 1.5.10-GCCcore-12.3.0
  - 1.5.10-GCCcore-13.2.0
  * 1.5.10-GCCcore-13.3.0
libev
- A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs.
- http://software.schmorp.de/pkg/libev.html
- Versions:
  - 4.33-GCC-11.2.0
  * 4.33-GCC-12.3.0
libevent
- The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
- https://libevent.org/
- Versions:
  - 2.1.11-GCCcore-9.3.0
  - 2.1.12-GCCcore-10.2.0
  - 2.1.12-GCCcore-10.3.0
  - 2.1.12-GCCcore-11.2.0
  - 2.1.12-GCCcore-11.3.0
  - 2.1.12-GCCcore-12.2.0
  - 2.1.12-GCCcore-12.3.0
  - 2.1.12-GCCcore-13.2.0
  - 2.1.12-GCCcore-13.3.0
  * 2.1.12-GCCcore-14.2.0
libexif
- A library for parsing, editing, and saving EXIF data.
- https://libexif.github.io/
- Versions:
  * 0.6.24-GCCcore-11.2.0
libfabric
- Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
- https://ofiwg.github.io/libfabric/
- Versions:
  - 1.11.0-GCCcore-9.3.0
  - 1.11.0-GCCcore-10.2.0
  - 1.12.1-GCCcore-10.3.0
  - 1.13.2-GCCcore-11.2.0
  - 1.15.1-GCCcore-11.3.0
  - 1.16.1-GCCcore-12.2.0
  - 1.18.0-GCCcore-12.3.0
  - 1.19.0-GCCcore-13.2.0
  - 1.21.0-GCCcore-13.3.0
  * 2.0.0-GCCcore-14.2.0
libfdf
- LibFDF is the official implementation of the FDF specifications for use in client codes.
- https://gitlab.com/siesta-project/libraries/libfdf
- Versions:
  * 0.5.1-GCC-12.3.0
libffi
- The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
- https://sourceware.org/libffi/
- Versions:
  - 3.3-GCCcore-9.3.0
  - 3.3-GCCcore-10.2.0
  - 3.3-GCCcore-10.3.0
  - 3.4.2-GCCcore-11.2.0
  - 3.4.2-GCCcore-11.3.0
  - 3.4.4-GCCcore-12.2.0
  - 3.4.4-GCCcore-12.3.0
  - 3.4.4-GCCcore-13.2.0
  - 3.4.5-GCCcore-13.3.0
  - 3.4.5-GCCcore-14.2.0
  * 3.5.1-GCCcore-14.3.0
libgcrypt
- Libgcrypt is a general purpose cryptographic library originally based on code from GnuPG
- https://gnupg.org/related_software/libgcrypt/index.html
- Versions:
  - 1.9.3-GCCcore-11.2.0
  * 1.10.3-GCCcore-12.3.0
libgd
- GD is an open source code library for the dynamic creation of images by programmers.
- https://libgd.github.io
- Versions:
  - 2.3.3-GCCcore-11.2.0
  - 2.3.3-GCCcore-12.3.0
  * 2.3.3-GCCcore-13.2.0
libgdiplus
- Libgdiplus is the Mono library that provides a GDI+-compatible API on non-Windows operating systems.
- https://www.mono-project.com/docs/gui/libgdiplus
- Versions:
  * 6.1-GCCcore-11.2.0
libgeotiff
- Library for reading and writing coordinate system information from/to GeoTIFF files
- https://directory.fsf.org/wiki/Libgeotiff
- Versions:
  - 1.6.0-GCCcore-10.3.0
  - 1.7.0-GCCcore-11.2.0
  - 1.7.1-GCCcore-11.3.0
  - 1.7.1-GCCcore-12.3.0
  - 1.7.3-GCCcore-13.2.0
  * 1.7.3-GCCcore-13.3.0
libgit2
- libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
- https://libgit2.org/
- Versions:
  - 1.1.0-GCCcore-10.3.0
  - 1.1.1-GCCcore-11.2.0
  - 1.4.3-GCCcore-11.3.0
  - 1.7.1-GCCcore-12.3.0
  - 1.7.2-GCCcore-13.2.0
  * 1.8.1-GCCcore-13.3.0
libglvnd
- libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
- https://gitlab.freedesktop.org/glvnd/libglvnd
- Versions:
  - 1.3.2-GCCcore-10.2.0
  - 1.3.3-GCCcore-10.3.0
  - 1.3.3-GCCcore-11.2.0
  - 1.4.0-GCCcore-11.3.0
  - 1.6.0-GCCcore-12.2.0
  - 1.6.0-GCCcore-12.3.0
  - 1.7.0-GCCcore-13.2.0
  * 1.7.0-GCCcore-13.3.0
libgpg-error
- Libgpg-error is a small library that defines common error values for all GnuPG components.
- https://gnupg.org/related_software/libgpg-error/index.html
- Versions:
  - 1.42-GCCcore-11.2.0
  * 1.48-GCCcore-12.3.0
libhomfly
- This is basically a conversion of the program written by Robert J Jenkins Jr into a shared library. It accepts as entry a character string, formatted in the same way as the input files that the original code used (see below). The returned value is the string that the original program would print on screen.
- https://github.com/miguelmarco/libhomfly
- Versions:
  * 1.02r6-GCCcore-13.2.0
libiconv
- Libiconv converts from one character encoding to another through Unicode conversion
- https://www.gnu.org/software/libiconv
- Versions:
  - 1.16-GCCcore-10.2.0
  - 1.16-GCCcore-10.3.0
  - 1.16-GCCcore-11.2.0
  - 1.17-GCCcore-11.3.0
  - 1.17-GCCcore-12.2.0
  - 1.17-GCCcore-12.3.0
  - 1.17-GCCcore-13.2.0
  - 1.17-GCCcore-13.3.0
  - 1.18-GCCcore-14.2.0
  * 1.18-GCCcore-14.3.0
libidn2
- Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.
- http://www.gnu.org/software/libidn2
- Versions:
  - 2.3.2-GCCcore-11.2.0
  - 2.3.7-GCCcore-12.3.0
  - 2.3.7-GCCcore-14.2.0
  * 2.3.8-GCCcore-14.3.0
libjpeg-turbo
- libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
- https://sourceforge.net/projects/libjpeg-turbo/
- Versions:
  - 2.0.6-GCCcore-10.3.0
  - 2.0.6-GCCcore-11.2.0
  - 2.1.3-GCCcore-11.3.0
  - 2.1.4-GCCcore-12.2.0
  - 2.1.5.1-GCCcore-12.3.0
  - 3.0.1-GCCcore-13.2.0
  * 3.0.1-GCCcore-13.3.0
libmatheval
- GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.
- https://www.gnu.org/software/libmatheval/
- Versions:
  * 1.1.11-GCCcore-9.3.0
libnsl
- The libnsl package contains the public client interface for NIS(YP).
- https://github.com/thkukuk/libnsl
- Versions:
  - 2.0.0-GCCcore-11.3.0
  * 2.0.1-GCCcore-12.3.0
libogg
- Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
- https://xiph.org/ogg/
- Versions:
  - 1.3.4-GCCcore-10.3.0
  - 1.3.5-GCCcore-11.2.0
  - 1.3.5-GCCcore-11.3.0
  - 1.3.5-GCCcore-12.3.0
  * 1.3.5-GCCcore-13.3.0
libopus
- Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
- https://www.opus-codec.org/
- Versions:
  - 1.3.1-GCCcore-11.3.0
  - 1.4-GCCcore-12.3.0
  * 1.5.2-GCCcore-13.3.0
libpciaccess
- Generic PCI access library.
- https://cgit.freedesktop.org/xorg/lib/libpciaccess/
- Versions:
  - 0.16-GCCcore-9.3.0
  - 0.16-GCCcore-10.2.0
  - 0.16-GCCcore-10.3.0
  - 0.16-GCCcore-11.2.0
  - 0.16-GCCcore-11.3.0
  - 0.17-GCCcore-12.2.0
  - 0.17-GCCcore-12.3.0
  - 0.17-GCCcore-13.2.0
  - 0.18.1-GCCcore-13.3.0
  * 0.18.1-GCCcore-14.2.0
libpng
- libpng is the official PNG reference library
- https://www.libpng.org/pub/png/libpng.html
- Versions:
  - 1.5.30
  - 1.6.37-GCCcore-9.3.0
  - 1.6.37-GCCcore-10.2.0
  - 1.6.37-GCCcore-10.3.0
  - 1.6.37-GCCcore-11.2.0
  - 1.6.37-GCCcore-11.3.0
  - 1.6.38-GCCcore-12.2.0
  - 1.6.39-GCCcore-12.3.0
  - 1.6.40-GCCcore-13.2.0
  - 1.6.43-GCCcore-13.3.0
  * 1.6.48-GCCcore-14.2.0
libpsl
- C library for the Public Suffix List
- https://rockdaboot.github.io/libpsl
- Versions:
  - 0.21.1-GCCcore-11.2.0
  - 0.21.5-GCCcore-12.3.0
  - 0.21.5-GCCcore-14.2.0
  * 0.21.5-GCCcore-14.3.0
libreadline
- The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
- https://tiswww.case.edu/php/chet/readline/rltop.html
- Versions:
  - 8.0-GCCcore-9.3.0
  - 8.0-GCCcore-10.2.0
  - 8.1-GCCcore-10.3.0
  - 8.1-GCCcore-11.2.0
  - 8.1.2-GCCcore-11.3.0
  - 8.2-GCCcore-12.2.0
  - 8.2-GCCcore-12.3.0
  - 8.2-GCCcore-13.2.0
  - 8.2-GCCcore-13.3.0
  - 8.2-GCCcore-14.2.0
  * 8.2-GCCcore-14.3.0
librttopo
- The RT Topology Library exposes an API to create and manage standard (ISO 13249 aka SQL/MM) topologies using user-provided data stores.
- https://git.osgeo.org/gitea/rttopo/librttopo
- Versions:
  - 1.1.0-GCC-11.2.0
  * 1.1.0-GCC-12.3.0
libsndfile
- Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
- http://www.mega-nerd.com/libsndfile
- Versions:
  - 1.0.31-GCCcore-10.3.0
  - 1.0.31-GCCcore-11.2.0
  - 1.1.0-GCCcore-11.3.0
  - 1.2.2-GCCcore-12.3.0
  * 1.2.2-GCCcore-13.3.0
libsodium
- Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
- https://doc.libsodium.org/
- Versions:
  - 1.0.18-GCCcore-10.3.0
  - 1.0.18-GCCcore-11.3.0
  - 1.0.18-GCCcore-12.3.0
  - 1.0.19-GCCcore-13.2.0
  - 1.0.20-GCCcore-13.3.0
  * 1.0.20-GCCcore-14.2.0
libspatialindex
- C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API
- https://libspatialindex.org
- Versions:
  - 1.9.3-GCCcore-11.2.0
  - 1.9.3-GCCcore-11.3.0
  * 1.9.3-GCCcore-12.3.0
libspatialite
- SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities.
- https://www.gaia-gis.it/fossil/libspatialite/home
- Versions:
  - 5.0.1-GCC-11.2.0
  * 5.1.0-GCC-12.3.0
libtasn1
- Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package.
- https://www.gnu.org/software/libtasn1/
- Versions:
  - 4.18.0-GCCcore-11.2.0
  * 4.19.0-GCCcore-12.3.0
libtirpc
- Libtirpc is a port of Suns Transport-Independent RPC library to Linux.
- https://sourceforge.net/projects/libtirpc/
- Versions:
  - 1.3.2-GCCcore-10.3.0
  - 1.3.2-GCCcore-11.2.0
  - 1.3.2-GCCcore-11.3.0
  - 1.3.3-GCCcore-12.3.0
  - 1.3.4-GCCcore-13.2.0
  * 1.3.5-GCCcore-13.3.0
libtool
- GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
- https://www.gnu.org/software/libtool
- Versions:
  - 2.4.6-GCCcore-9.3.0
  - 2.4.6-GCCcore-10.2.0
  - 2.4.6-GCCcore-10.3.0
  - 2.4.6-GCCcore-11.2.0
  - 2.4.7-GCCcore-11.3.0
  - 2.4.7-GCCcore-12.2.0
  - 2.4.7-GCCcore-12.3.0
  - 2.4.7-GCCcore-13.2.0
  - 2.4.7-GCCcore-13.3.0
  - 2.4.7
  * 2.5.4-GCCcore-14.2.0
libunistring
- This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
- https://www.gnu.org/software/libunistring/
- Versions:
  - 0.9.10-GCCcore-9.3.0
  - 1.0-GCCcore-11.2.0
  - 1.1-GCCcore-12.3.0
  - 1.2-GCCcore-13.3.0
  - 1.3-GCCcore-14.2.0
  * 1.3-GCCcore-14.3.0
libunwind
- The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
- https://www.nongnu.org/libunwind/
- Versions:
  - 1.3.1-GCCcore-9.3.0
  - 1.4.0-GCCcore-10.2.0
  - 1.4.0-GCCcore-10.3.0
  - 1.5.0-GCCcore-11.2.0
  - 1.6.2-GCCcore-11.3.0
  - 1.6.2-GCCcore-12.2.0
  - 1.6.2-GCCcore-12.3.0
  - 1.6.2-GCCcore-13.2.0
  * 1.8.1-GCCcore-13.3.0
libvorbis
- Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
- https://xiph.org/vorbis/
- Versions:
  - 1.3.7-GCCcore-10.3.0
  - 1.3.7-GCCcore-11.2.0
  - 1.3.7-GCCcore-11.3.0
  - 1.3.7-GCCcore-12.3.0
  * 1.3.7-GCCcore-13.3.0
libwebp
- WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
- https://developers.google.com/speed/webp/
- Versions:
  - 1.2.0-GCCcore-11.2.0
  - 1.3.1-GCCcore-12.3.0
  - 1.3.2-GCCcore-13.2.0
  * 1.4.0-GCCcore-13.3.0
libwpe
- WPE is the reference WebKit port for embedded and low-consumption computer devices. It has been designed from the ground-up with performance, small footprint, accelerated content rendering, and simplicity of deployment in mind, bringing the excellence of the WebKit engine to countless platforms and target devices.
- https://webkit.org/wpe
- Versions:
  - 1.13.3-GCCcore-11.2.0
  * 1.16.0-GCCcore-12.3.0
libxc
- Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
- https://libxc.gitlab.io
- Versions:
  - 5.2.3-GCC-11.3.0
  - 6.1.0-GCC-12.2.0
  - 6.2.2-GCC-12.3.0
  - 6.2.2-GCC-13.2.0
  * 6.2.2-GCC-13.3.0
libxml2
- Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
- http://xmlsoft.org/
- Versions:
  - 2.9.10-GCCcore-9.3.0
  - 2.9.10-GCCcore-10.2.0
  - 2.9.10-GCCcore-10.3.0
  - 2.9.10-GCCcore-11.2.0
  - 2.9.13-GCCcore-11.3.0
  - 2.10.3-GCCcore-12.2.0
  - 2.11.4-GCCcore-12.3.0
  - 2.11.5-GCCcore-13.2.0
  - 2.12.7-GCCcore-13.3.0
  - 2.13.4-GCCcore-14.2.0
  * 2.14.3-GCCcore-14.3.0
libxslt
- Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
- http://xmlsoft.org/
- Versions:
  - 1.1.34-GCCcore-11.2.0
  - 1.1.34-GCCcore-11.3.0
  - 1.1.38-GCCcore-12.3.0
  - 1.1.38-GCCcore-13.2.0
  * 1.1.42-GCCcore-13.3.0
libyaml
- LibYAML is a YAML parser and emitter written in C.
- https://pyyaml.org/wiki/LibYAML
- Versions:
  - 0.2.5-GCCcore-11.2.0
  - 0.2.5-GCCcore-11.3.0
  - 0.2.5-GCCcore-12.2.0
  - 0.2.5-GCCcore-12.3.0
  - 0.2.5-GCCcore-13.2.0
  * 0.2.5-GCCcore-13.3.0
libzip
- libzip is a C library for reading, creating, and modifying zip archives.
- https://libzip.org/
- Versions:
  - 1.7.3-GCCcore-11.2.0
  * 1.10.1-GCCcore-12.3.0
lrcalc
- The Littlewood-Richardson Calculator is a program designed to compute Littlewood-Richardson coefficients.
- https://sites.math.rutgers.edu/~asbuch/lrcalc/
- Versions:
  * 2.1-GCCcore-13.2.0
lrslib
- lrslib is a self-contained ANSI C implementation of the reverse search algorithm for vertex enumeration/convex hull problems
- http://cgm.cs.mcgill.ca/~avis/C/lrs.html
- Versions:
  * 7.2-gompi-2023b
lxml
- The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
- https://lxml.de/
- Versions:
  - 4.6.3-GCCcore-11.2.0
  - 4.9.1-GCCcore-11.3.0
  - 4.9.2-GCCcore-12.3.0
  - 4.9.3-GCCcore-13.2.0
  * 5.3.0-GCCcore-13.3.0
lz4
- LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
- https://lz4.github.io/lz4/
- Versions:
  - 1.9.2-GCCcore-9.3.0
  - 1.9.2-GCCcore-10.2.0
  - 1.9.3-GCCcore-10.3.0
  - 1.9.3-GCCcore-11.2.0
  - 1.9.3-GCCcore-11.3.0
  - 1.9.4-GCCcore-12.2.0
  - 1.9.4-GCCcore-12.3.0
  - 1.9.4-GCCcore-13.2.0
  - 1.9.4-GCCcore-13.3.0
  * 1.10.0-GCCcore-14.2.0
m4ri
- M4RI is a library for fast arithmetic with dense matrices over F2.
- https://github.com/malb/m4ri
- Versions:
  * 20200125-GCC-13.2.0
m4rie
- M4RIE is a library for fast arithmetic with dense matrices.
- https://github.com/malb/m4rie
- Versions:
  * 20200125-GCC-13.2.0
magma
- The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems.
- https://icl.cs.utk.edu/magma/
- Versions:
  * 2.7.2-foss-2023a-CUDA-12.1.1
make
- GNU version of make utility
- https://www.gnu.org/software/make/make.html
- Versions:
  - 4.3-GCCcore-9.3.0
  - 4.3-GCCcore-10.2.0
  - 4.3-GCCcore-10.3.0
  - 4.3-GCCcore-11.2.0
  - 4.3-GCCcore-11.3.0
  - 4.3-GCCcore-12.2.0
  - 4.4.1-GCCcore-12.3.0
  - 4.4.1-GCCcore-13.2.0
  * 4.4.1-GCCcore-13.3.0
makeinfo
- makeinfo is part of the Texinfo project, the official documentation format of the GNU project.
- https://www.gnu.org/software/texinfo/
- Versions:
  - 6.7-GCCcore-9.3.0-minimal
  - 6.7-GCCcore-10.2.0-minimal
  - 6.7-GCCcore-10.3.0-minimal
  - 6.8-GCCcore-11.2.0
  - 6.8-GCCcore-11.3.0
  - 7.0.3-GCCcore-12.3.0
  - 7.1-GCCcore-13.2.0
  * 7.1-GCCcore-13.3.0
matplotlib
- matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
- https://matplotlib.org
- Versions:
  - 3.4.2-foss-2021a
  - 3.4.3-foss-2021b
  - 3.5.2-foss-2022a
  - 3.7.0-gfbf-2022b
  - 3.7.2-gfbf-2023a
  - 3.8.2-gfbf-2023b
  * 3.9.2-gfbf-2024a
maturin
- This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
- https://github.com/pyo3/maturin
- Versions:
  - 1.3.1-GCCcore-13.2.0
  - 1.4.0-GCCcore-12.3.0-Rust-1.75.0
  - 1.5.0-GCCcore-13.2.0-Rust-1.76.0
  - 1.6.0-GCCcore-13.3.0
  * 1.8.3-GCCcore-14.2.0
mcqd
- MaxCliqueDyn is a fast exact algorithm for finding a maximum clique in an undirected graph.
- https://gitlab.com/janezkonc/mcqd
- Versions:
  * 1.0.0-GCC-13.2.0
mctc-lib
- Common tool chain for working with molecular structure data in various applications. This library provides a unified way to perform operations on molecular structure data, like reading and writing to common geometry file formats.
- https://grimme-lab.github.io/mctc-lib
- Versions:
  * 0.3.1-GCC-12.3.0
meson-python
- Python build backend (PEP 517) for Meson projects
- https://github.com/mesonbuild/meson-python
- Versions:
  - 0.13.2-GCCcore-12.3.0
  - 0.15.0-GCCcore-13.2.0
  * 0.16.0-GCCcore-13.3.0
minizip
- Mini zip and unzip based on zlib
- https://www.winimage.com/zLibDll/minizip.html
- Versions:
  - 1.1-GCCcore-11.2.0
  * 1.1-GCCcore-12.3.0
ml_dtypes
- ml_dtypes is a stand-alone implementation of several NumPy dtype extensions used in machine learning libraries, including: bfloat16: an alternative to the standard float16 format float8_*: several experimental 8-bit floating point representations including: float8_e4m3b11fnuz float8_e4m3fn float8_e4m3fnuz float8_e5m2 float8_e5m2fnuz
- https://github.com/jax-ml/ml_dtypes
- Versions:
  * 0.3.2-gfbf-2023a
molmod
- MolMod is a Python library with many compoments that are useful to write molecular modeling programs.
- https://molmod.github.io/molmod/
- Versions:
  * 1.4.8-foss-2023a
mpi4py
- MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
- https://github.com/mpi4py/mpi4py
- Versions:
  - 3.1.4-gompi-2022b
  - 3.1.4-gompi-2023a
  - 3.1.5-gompi-2023b
  * 4.0.1-gompi-2024a
mstore
- Molecular structure store for testing
- https://github.com/grimme-lab/mstore
- Versions:
  * 0.3.0-GCC-12.3.0
muparserx
- A C++ Library for Parsing Expressions with Strings, Complex Numbers, Vectors, Matrices and more.
- https://beltoforion.de/en/muparserx/
- Versions:
  * 4.0.8-GCCcore-11.2.0
nauty
- nauty and Traces are programs for computing automorphism groups of graphs and digraphs. They can also produce a canonical label.
- https://pallini.di.uniroma1.it/
- Versions:
  * 2.8.8-GCC-13.2.0
ncbi-vdb
- The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
- https://github.com/ncbi/ncbi-vdb
- Versions:
  - 3.0.10-gompi-2023a
  * 3.2.0-gompi-2024a
ncurses
- The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
- https://www.gnu.org/software/ncurses/
- Versions:
  - 6.1
  - 6.2-GCCcore-9.3.0
  - 6.2-GCCcore-10.2.0
  - 6.2-GCCcore-10.3.0
  - 6.2-GCCcore-11.2.0
  - 6.2
  - 6.3-GCCcore-11.3.0
  - 6.3-GCCcore-12.2.0
  - 6.3
  - 6.4-GCCcore-12.3.0
  - 6.4-GCCcore-13.2.0
  - 6.4
  - 6.5-GCCcore-13.3.0
  - 6.5-GCCcore-14.2.0
  - 6.5-GCCcore-14.3.0
  * 6.5
netCDF
- NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
- https://www.unidata.ucar.edu/software/netcdf/
- Versions:
  - 4.8.0-gompi-2021a
  - 4.8.1-gompi-2021b
  - 4.9.0-gompi-2022a
  - 4.9.2-gompi-2023a
  - 4.9.2-gompi-2023b
  * 4.9.2-gompi-2024a
netCDF-C++4
- NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
- https://www.unidata.ucar.edu/software/netcdf/
- Versions:
  * 4.3.1-gompi-2023a
netCDF-Fortran
- NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
- https://www.unidata.ucar.edu/software/netcdf/
- Versions:
  - 4.6.0-gompi-2022a
  * 4.6.1-gompi-2023a
nettle
- Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
- https://www.lysator.liu.se/~nisse/nettle/
- Versions:
  - 3.7.2-GCCcore-10.3.0
  - 3.7.3-GCCcore-11.2.0
  - 3.8-GCCcore-11.3.0
  - 3.9.1-GCCcore-12.3.0
  - 3.9.1-GCCcore-13.2.0
  * 3.10-GCCcore-13.3.0
networkx
- NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
- https://pypi.python.org/pypi/networkx
- Versions:
  - 2.5.1-foss-2021a
  - 2.8.4-foss-2022a
  - 3.1-gfbf-2023a
  * 3.2.1-gfbf-2023b
nghttp2
- This is an implementation of the Hypertext Transfer Protocol version 2 in C. The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2. An HPACK encoder and decoder are available as a public API.
- https://github.com/nghttp2/nghttp2
- Versions:
  - 1.48.0-GCC-11.2.0
  * 1.58.0-GCC-12.3.0
nghttp3
- nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C. It does not depend on any particular QUIC transport implementation.
- https://github.com/ngtcp2/nghttp3
- Versions:
  - 0.6.0-GCCcore-11.2.0
  * 1.3.0-GCCcore-12.3.0
ngtcp2
- 'Call it TCP/2. One More Time.' ngtcp2 project is an effort to implement RFC9000 QUIC protocol.
- https://github.com/ngtcp2/ngtcp2
- Versions:
  - 0.7.0-GCC-11.2.0
  * 1.2.0-GCC-12.3.0
nlohmann_json
- JSON for Modern C++
- https://github.com/nlohmann/json
- Versions:
  - 3.10.5-GCCcore-11.3.0
  - 3.11.2-GCCcore-12.3.0
  - 3.11.3-GCCcore-13.2.0
  * 3.11.3-GCCcore-13.3.0
nodejs
- Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
- https://nodejs.org
- Versions:
  - 14.17.0-GCCcore-10.3.0
  - 14.17.6-GCCcore-11.2.0
  - 16.15.1-GCCcore-11.3.0
  - 18.12.1-GCCcore-12.2.0
  - 18.17.1-GCCcore-12.3.0
  - 20.9.0-GCCcore-13.2.0
  - 20.13.1-GCCcore-13.3.0
  * 22.16.0-GCCcore-14.2.0
nose3
- Nose extends unittest to make testing easier.
- https://nose.readthedocs.io/
- Versions:
  * 1.3.8-GCCcore-12.3.0
nsync
- nsync is a C library that exports various synchronization primitives, such as mutexes
- https://github.com/google/nsync
- Versions:
  - 1.25.0-GCCcore-11.3.0
  * 1.26.0-GCCcore-12.3.0
numactl
- The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
- https://github.com/numactl/numactl
- Versions:
  - 2.0.13-GCCcore-9.3.0
  - 2.0.13-GCCcore-10.2.0
  - 2.0.14-GCCcore-10.3.0
  - 2.0.14-GCCcore-11.2.0
  - 2.0.14-GCCcore-11.3.0
  - 2.0.16-GCCcore-12.2.0
  - 2.0.16-GCCcore-12.3.0
  - 2.0.16-GCCcore-13.2.0
  - 2.0.18-GCCcore-13.3.0
  * 2.0.19-GCCcore-14.2.0
numba
- Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.
- https://numba.pydata.org/
- Versions:
  - 0.53.1-foss-2021a
  - 0.56.4-foss-2022a
  * 0.58.1-foss-2023a
numexpr
- The numexpr package evaluates multiple-operator array expressions many times faster than NumPy can. It accepts the expression as a string, analyzes it, rewrites it more efficiently, and compiles it on the fly into code for its internal virtual machine (VM). Due to its integrated just-in-time (JIT) compiler, it does not require a compiler at runtime.
- https://numexpr.readthedocs.io/en/latest/
- Versions:
  * 2.8.4-foss-2022a
numpy
- NumPy is the fundamental package for scientific computing with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.
- http://www.numpy.org
- Versions:
  * 1.16.6-foss-2023a-Python-2.7.18
ocamlbuild
- OCamlbuild is a generic build tool, that has built-in rules for building OCaml library and programs.
- https://github.com/ocaml/ocamlbuild
- Versions:
  * 0.14.3-GCC-13.2.0
optree
- Optimized PyTree Utilities
- https://optree.readthedocs.io/en/latest/
- Versions:
  * 0.13.0-GCCcore-13.2.0
p11-kit
- Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.
- https://p11-glue.freedesktop.org/p11-kit.html
- Versions:
  - 0.24.1-GCCcore-11.2.0
  * 0.25.3-GCCcore-12.3.0
paramiko
- Paramiko is a pure-Python (3.6+) implementation of the SSHv2 protocol, providing both client and server functionality. It provides the foundation for the high-level SSH library Fabric, which is what we recommend you use for common client use-cases such as running remote shell commands or transferring files.
- https://paramiko.org
- Versions:
  * 3.2.0-GCCcore-12.3.0
patchelf
- PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
- https://github.com/NixOS/patchelf
- Versions:
  - 0.18.0-GCCcore-12.3.0
  - 0.18.0-GCCcore-13.2.0
  - 0.18.0-GCCcore-13.3.0
  * 0.18.0-GCCcore-14.2.0
pigz
- pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.
- https://zlib.net/pigz/
- Versions:
  - 2.7-GCCcore-11.3.0
  - 2.8-GCCcore-12.3.0
  * 2.8-GCCcore-13.2.0
pixman
- Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
- http://www.pixman.org/
- Versions:
  - 0.40.0-GCCcore-10.3.0
  - 0.40.0-GCCcore-11.2.0
  - 0.40.0-GCCcore-11.3.0
  - 0.42.2-GCCcore-12.2.0
  - 0.42.2-GCCcore-12.3.0
  - 0.42.2-GCCcore-13.2.0
  - 0.43.4-GCCcore-13.3.0
  * 0.46.2-GCCcore-14.2.0
pkg-config
- pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).
- https://www.freedesktop.org/wiki/Software/pkg-config/
- Versions:
  - 0.29.2-GCCcore-9.3.0
  - 0.29.2-GCCcore-10.2.0
  - 0.29.2-GCCcore-10.3.0
  - 0.29.2-GCCcore-11.2.0
  - 0.29.2-GCCcore-11.3.0
  * 0.29.2-GCCcore-12.3.0
pkgconf
- pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
- https://github.com/pkgconf/pkgconf
- Versions:
  - 1.8.0-GCCcore-11.2.0
  - 1.8.0-GCCcore-11.3.0
  - 1.8.0
  - 1.9.3-GCCcore-12.2.0
  - 1.9.5-GCCcore-12.3.0
  - 2.0.3-GCCcore-13.2.0
  - 2.2.0-GCCcore-13.3.0
  - 2.3.0-GCCcore-14.2.0
  * 2.4.3-GCCcore-14.3.0
pkgconfig
- pkgconfig is a Python module to interface with the pkg-config command line tool
- https://github.com/matze/pkgconfig
- Versions:
  - 1.5.4-GCCcore-10.3.0-python
  - 1.5.5-GCCcore-11.3.0-python
  - 1.5.5-GCCcore-12.2.0-python
  - 1.5.5-GCCcore-12.3.0-python
  * 1.5.5-GCCcore-13.2.0-python
planarity
- A library for implementing graph algorithms
- https://github.com/graph-algorithms/edge-addition-planarity-suite
- Versions:
  * 3.0.2.0-GCC-13.2.0
pocl
- PoCL is a portable open source (MIT-licensed) implementation of the OpenCL standard (1.2 with some 2.0 features supported).
- http://portablecl.org
- Versions:
  * 6.0-GCC-13.3.0
poetry
- Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
- https://python-poetry.org
- Versions:
  - 1.5.1-GCCcore-12.3.0
  - 1.6.1-GCCcore-13.2.0
  - 1.7.1-GCCcore-12.3.0
  * 1.8.3-GCCcore-13.3.0
poppler
- Poppler is a PDF rendering library
- https://poppler.freedesktop.org
- Versions:
  * 24.04.0-GCC-13.2.0
primecount
- primecount is a command-line program and C/C++ library that counts the number of primes ≤ x (maximum 1031) using highly optimized implementations of the combinatorial prime counting algorithms.
- https://github.com/kimwalisch/primecount
- Versions:
  * 7.14-GCCcore-13.2.0
primecountpy
- This is a Cython interface to the C++ library primecount.
- https://pypi.org/project/primecountpy
- Versions:
  * 0.1.0-GCCcore-13.2.0
protobuf
- Protocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data.
- https://github.com/protocolbuffers/protobuf
- Versions:
  - 3.17.3-GCCcore-11.2.0
  - 3.19.4-GCCcore-11.3.0
  - 23.0-GCCcore-12.2.0
  - 24.0-GCCcore-12.3.0
  * 25.3-GCCcore-13.2.0
protobuf-python
- Python Protocol Buffers runtime library.
- https://github.com/google/protobuf/
- Versions:
  - 3.19.4-GCCcore-11.3.0
  - 4.23.0-GCCcore-12.2.0
  - 4.24.0-GCCcore-12.3.0
  * 4.25.3-GCCcore-13.2.0
psutil
- A cross-platform process and system utilities module for Python
- https://github.com/giampaolo/psutil
- Versions:
  * 5.9.8-GCCcore-12.3.0
psycopg2
- Psycopg is the most popular PostgreSQL adapter for the Python programming language.
- https://psycopg.org/
- Versions:
  - 2.9.5-GCCcore-11.2.0
  * 2.9.9-GCCcore-12.3.0
pugixml
- pugixml is a light-weight C++ XML processing library
- https://pugixml.org/
- Versions:
  - 1.12.1-GCCcore-11.2.0
  * 1.14-GCCcore-12.3.0
pybedtools
- pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python.
- https://daler.github.io/pybedtools
- Versions:
  - 0.9.1-foss-2023a
  * 0.10.0-foss-2023b
pybind11
- pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
- https://pybind11.readthedocs.io
- Versions:
  - 2.6.2-GCCcore-10.3.0
  - 2.7.1-GCCcore-11.2.0
  - 2.9.2-GCCcore-11.3.0
  - 2.9.2-GCCcore-12.3.0-Python-2.7.18
  - 2.10.3-GCCcore-12.2.0
  - 2.11.1-GCCcore-12.3.0
  - 2.11.1-GCCcore-13.2.0
  * 2.12.0-GCC-13.3.0
pyfaidx
- pyfaidx: efficient pythonic random access to fasta subsequences
- https://pypi.python.org/pypi/pyfaidx
- Versions:
  - 0.8.1.1-GCCcore-12.3.0
  * 0.8.1.1-GCCcore-13.2.0
pyproj
- Python interface to PROJ4 library for cartographic transformations
- https://pyproj4.github.io/pyproj
- Versions:
  * 3.6.0-GCCcore-12.3.0
pytest
- The pytest framework makes it easy to write small, readable tests, and can scale to support complex functional testing for applications and libraries.
- https://docs.pytest.org/en/latest/
- Versions:
  - 4.6.11-GCCcore-12.3.0-Python-2.7.18
  * 7.2.2-GCCcore-11.2.0
pytest-flakefinder
- Runs tests multiple times to expose flakiness.
- https://github.com/dropbox/pytest-flakefinder
- Versions:
  - 1.1.0-GCCcore-11.3.0
  - 1.1.0-GCCcore-12.3.0
  * 1.1.0-GCCcore-13.2.0
pytest-rerunfailures
- pytest plugin to re-run tests to eliminate flaky failures.
- https://github.com/pytest-dev/pytest-rerunfailures
- Versions:
  - 11.1-GCCcore-11.3.0
  - 12.0-GCCcore-12.2.0
  - 12.0-GCCcore-12.3.0
  * 14.0-GCCcore-13.2.0
pytest-shard
- pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).
- https://github.com/AdamGleave/pytest-shard
- Versions:
  - 0.1.2-GCCcore-11.3.0
  - 0.1.2-GCCcore-12.2.0
  - 0.1.2-GCCcore-12.3.0
  * 0.1.2-GCCcore-13.2.0
pytest-xdist
- xdist: pytest distributed testing plugin The pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them. Before running tests remotely, pytest efficiently “rsyncs” your program source code to the remote place. All test results are reported back and displayed to your local terminal. You may specify different Python versions and interpreters.
- https://github.com/pytest-dev/pytest-xdist
- Versions:
  * 2.5.0-GCCcore-11.3.0
python-isal
- Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
- https://github.com/pycompression/python-isal
- Versions:
  - 1.1.0-GCCcore-11.3.0
  - 1.1.0-GCCcore-12.3.0
  * 1.6.1-GCCcore-13.2.0
qrupdate
- qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.
- https://sourceforge.net/projects/qrupdate/
- Versions:
  - 1.1.2-GCCcore-11.2.0
  * 1.1.2-GCCcore-11.3.0
quarto
- An open-source scientific and technical publishing system.
- https://quarto.org/
- Versions:
  * 1.5.57-x64
rankwidth
- rw calculates rank-width and rank-decompositions. It is based on ideas from "Computing rank-width exactly" by Sang-il Oum, "Sopra una formula numerica" by Ernesto Pascal, "Generation of a Vector from the Lexicographical Index" by B.P. Buckles and M. Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise.
- https://sourceforge.net/projects/rankwidth/
- Versions:
  * 0.9-foss-2023b
re2c
- re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
- https://re2c.org
- Versions:
  - 2.0.3-GCCcore-10.2.0
  - 2.2-GCCcore-11.2.0
  - 2.2-GCCcore-11.3.0
  - 3.0-GCCcore-12.2.0
  - 3.1-GCCcore-12.3.0
  - 3.1-GCCcore-13.2.0
  * 3.1-GCCcore-13.3.0
retworkx
- retworkx is a general purpose graph library for python3 written in Rust to take advantage of the performance and safety that Rust provides. It was built as a replacement for qiskit's previous (and current) networkx usage (hence the name) but is designed to provide a high performance general purpose graph library for any python application. The project was originally started to build a faster directed graph to use as the underlying data structure for the DAG at the center of qiskit-terra's transpiler, but it has since grown to cover all the graph usage in Qiskit and other applications.
- https://github.com/Qiskit/retworkx
- Versions:
  * 0.9.0-foss-2021a
rgdal
- Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4 and <= 2.5.0) and access to projection/transformation operations from the 'PROJ.4' library.
- https://rgdal.r-forge.r-project.org/
- Versions:
  * 1.6-6-foss-2022a
rstudio-apptainer
- Versions:
  - 4.1.2-basic
  - 4.4.0-bioconductor
  - 4.4.3-tidyverse
  - 4.5.0-bioconductor
  - 4.5.0-tidyverse
  - 4.5.0
  * 2024.12.0-467
ruamel.yaml
- ruamel.yaml is a YAML 1.2 loader/dumper package for Python.
- https://sourceforge.net/projects/ruamel-yaml
- Versions:
  * 0.17.32-GCCcore-12.3.0
scikit-bio
- scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms and educational resources for bioinformatics.
- http://scikit-bio.org
- Versions:
  - 0.5.7-foss-2022a
  * 0.6.0-foss-2023a
scikit-build
- Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
- https://scikit-build.readthedocs.io/en/latest
- Versions:
  - 0.11.1-GCCcore-10.3.0
  - 0.17.6-GCCcore-12.3.0
  - 0.17.6-GCCcore-13.2.0
  * 0.17.6-GCCcore-13.3.0
scikit-build-core
- Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.
- https://scikit-build.readthedocs.io/en/latest/
- Versions:
  - 0.9.3-GCCcore-13.2.0
  * 0.10.6-GCCcore-13.3.0
scikit-learn
- Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.
- https://scikit-learn.org/stable/index.html
- Versions:
  - 0.24.2-foss-2021a
  - 1.1.2-foss-2022a
  - 1.2.1-gfbf-2022b
  * 1.3.1-gfbf-2023a
scikit-plot
- Scikit-plot is the result of an unartistic data scientist's dreadful realization that *visualization is one of the most crucial components in the data science process, not just a mere afterthought*.
- https://github.com/reiinakano/scikit-plot
- Versions:
  * 0.3.7-foss-2022b
setuptools-rust
- setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
- https://github.com/PyO3/setuptools-rust
- Versions:
  - 1.6.0-GCCcore-12.3.0
  - 1.8.0-GCCcore-13.2.0
  - 1.9.0-GCCcore-13.3.0
  * 1.11.0-GCCcore-14.2.0
sirocco
- C++ library that allows to compute piecewise linear approximations of the path followed by the root of a complex polynomial
- https://github.com/miguelmarco/SIROCCO2/
- Versions:
  * 2.1.0-GCC-13.2.0
snappy
- Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
- https://github.com/google/snappy
- Versions:
  - 1.1.9-GCCcore-11.2.0
  - 1.1.9-GCCcore-11.3.0
  - 1.1.9-GCCcore-12.2.0
  - 1.1.10-GCCcore-12.3.0
  - 1.1.10-GCCcore-13.2.0
  * 1.2.1-GCCcore-13.3.0
spdlog
- Very fast, header-only/compiled, C++ logging library.
- https://github.com/gabime/spdlog
- Versions:
  * 1.12.0-GCCcore-13.2.0
statsmodels
- Statsmodels is a Python module that allows users to explore data, estimate statistical models, and perform statistical tests.
- https://www.statsmodels.org/
- Versions:
  - 0.13.1-foss-2022a
  * 0.14.1-gfbf-2023a
sympy
- SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.
- https://sympy.org/
- Versions:
  - 1.8-foss-2021a
  - 1.10.1-foss-2022a
  - 1.11.1-foss-2022a
  - 1.12-gfbf-2023a
  * 1.12-gfbf-2023b
tbb
- Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
- https://github.com/oneapi-src/oneTBB
- Versions:
  - 2021.11.0-GCCcore-12.3.0
  * 2021.13.0-GCCcore-13.2.0
tblis
- TBLIS is a library and framework for performing tensor operations, especially tensor contraction, using native algorithms.
- https://github.com/devinamatthews/tblis
- Versions:
  * 20230422-foss-2023a
tdlib
- treedec provides tree decomposition algorithms.
- https://github.com/freetdi/tdlib/
- Versions:
  * 0.9.3-GCC-13.2.0
tensorboard
- TensorBoard is a suite of web applications for inspecting and understanding your TensorFlow runs and graphs.
- https://github.com/tensorflow/tensorboard
- Versions:
  - 2.10.0-foss-2022a
  - 2.15.1-gfbf-2023a
  * 2.18.0-gfbf-2023b
tensorboardX
- Tensorboard for PyTorch.
- https://github.com/lanpa/tensorboardX
- Versions:
  * 2.6.2.2-foss-2023a
test-drive
- This project offers a lightweight, procedural unit testing framework based on nothing but standard Fortran.
- https://github.com/fortran-lang/test-drive
- Versions:
  * 0.5.0-GCC-12.3.0
texinfo
- Texinfo is the official documentation format of the GNU project.
- https://www.gnu.org/software/texinfo/
- Versions:
  * 7.1-GCCcore-12.3.0
texlive
- TeX is a typesetting language. Instead of visually formatting your text, you enter your manuscript text intertwined with TeX commands in a plain text file. You then run TeX to produce formatted output, such as a PDF file. Thus, in contrast to standard word processors, your document is a separate file that does not pretend to be a representation of the final typeset output, and so can be easily edited and manipulated.
- https://tug.org
- Versions:
  * 20230313-GCC-13.2.0
tlparse
- Parse structured PT2 (PyTorch 2) logs
- https://github.com/ezyang/tlparse
- Versions:
  * 0.3.5-GCCcore-13.2.0
tornado
- Tornado is a Python web framework and asynchronous networking library.
- https://github.com/tornadoweb/tornado
- Versions:
  - 6.3.2-GCCcore-12.3.0
  - 6.4-GCCcore-13.2.0
  * 6.4.1-GCCcore-13.3.0
tqdm
- A fast, extensible progress bar for Python and CLI
- https://github.com/tqdm/tqdm
- Versions:
  - 4.64.0-GCCcore-11.3.0
  * 4.66.1-GCCcore-12.3.0
typing-extensions
- Typing Extensions - Backported and Experimental Type Hints for Python
- https://github.com/python/typing_extensions
- Versions:
  - 4.3.0-GCCcore-11.3.0
  - 4.9.0-GCCcore-12.3.0
  * 4.10.0-GCCcore-13.2.0
umap-learn
- Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction.
- https://umap-learn.readthedocs.io/en/latest/
- Versions:
  - 0.5.3-foss-2022a
  * 0.5.5-foss-2023a
unifdef
- unifdef - selectively remove C preprocessor conditionals The unifdef utility selectively processes conditional C preprocessor and the additional text that they delimit, while otherwise leaving the file alone.
- https://github.com/fanf2/unifdef
- Versions:
  * 2.12-GCCcore-12.3.0
unittest-xml-reporting
- A unittest test runner that can save test results to XML files in xUnit format. The files can be consumed by a wide range of tools, such as build systems, IDEs and continuous integration servers.
- http://github.com/xmlrunner/unittest-xml-reporting
- Versions:
  * 3.1.0-GCCcore-13.2.0
utf8proc
- utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
- https://github.com/JuliaStrings/utf8proc
- Versions:
  - 2.7.0-GCCcore-11.3.0
  - 2.8.0-GCCcore-12.3.0
  * 2.9.0-GCCcore-13.3.0
util-linux
- Set of Linux utilities
- https://www.kernel.org/pub/linux/utils/util-linux
- Versions:
  - 2.36-GCCcore-10.2.0
  - 2.36-GCCcore-10.3.0
  - 2.37-GCCcore-11.2.0
  - 2.38-GCCcore-11.3.0
  - 2.38.1-GCCcore-12.2.0
  - 2.39-GCCcore-12.3.0
  - 2.39-GCCcore-13.2.0
  - 2.40-GCCcore-13.3.0
  * 2.41-GCCcore-14.2.0
virtualenv
- A tool for creating isolated virtual python environments.
- https://github.com/pypa/virtualenv
- Versions:
  - 20.23.1-GCCcore-12.3.0
  - 20.24.6-GCCcore-13.2.0
  * 20.26.2-GCCcore-13.3.0
wget
- GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc.
- https://www.gnu.org/software/wget
- Versions:
  * 1.24.5-GCCcore-12.3.0
wpebackend-fdo
- WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance.
- https://wpewebkit.org/
- Versions:
  - 1.13.1-GCCcore-11.2.0
  * 1.15.90-GCCcore-12.3.0
wrapt
- The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions.
- https://pypi.org/project/wrapt/
- Versions:
  * 1.15.0-gfbf-2023a
wxPython
- Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code.
- https://www.wxpython.org/
- Versions:
  - 4.2.0-foss-2021b
  * 4.2.1-foss-2023a
wxWidgets
- wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI.
- https://www.wxwidgets.org
- Versions:
  - 3.2.0-GCC-11.2.0
  * 3.2.2.1-GCC-12.3.0
x264
- x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
- https://www.videolan.org/developers/x264.html
- Versions:
  - 20220620-GCCcore-11.3.0
  - 20230226-GCCcore-12.2.0
  - 20230226-GCCcore-12.3.0
  - 20231019-GCCcore-13.2.0
  * 20240513-GCCcore-13.3.0
x265
- x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
- https://x265.org/
- Versions:
  - 3.5-GCCcore-11.3.0
  - 3.5-GCCcore-12.2.0
  - 3.5-GCCcore-12.3.0
  - 3.5-GCCcore-13.2.0
  * 3.6-GCCcore-13.3.0
xmlf90
- A fast XML parser and generator in Fortran
- https://gitlab.com/siesta-project/libraries/xmlf90
- Versions:
  * 1.6.3-GCC-12.3.0
xorg-macros
- X.org macros utilities.
- https://gitlab.freedesktop.org/xorg/util/macros
- Versions:
  - 1.19.2-GCCcore-9.3.0
  - 1.19.2-GCCcore-10.2.0
  - 1.19.3-GCCcore-10.3.0
  - 1.19.3-GCCcore-11.2.0
  - 1.19.3-GCCcore-11.3.0
  - 1.19.3-GCCcore-12.2.0
  - 1.20.0-GCCcore-12.3.0
  - 1.20.0-GCCcore-13.2.0
  - 1.20.1-GCCcore-13.3.0
  * 1.20.2-GCCcore-14.2.0
xprop
- The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
- https://www.x.org/wiki/
- Versions:
  - 1.2.5-GCCcore-11.2.0
  - 1.2.5-GCCcore-11.3.0
  - 1.2.6-GCCcore-12.3.0
  * 1.2.7-GCCcore-13.2.0
xxd
- xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
- https://www.vim.org
- Versions:
  - 9.0.2112-GCCcore-12.3.0
  * 9.1.0307-GCCcore-13.2.0
yaff
- Yaff stands for 'Yet another force field'. It is a pythonic force-field code.
- https://molmod.github.io/yaff/
- Versions:
  * 1.6.0-foss-2023a
yaml-cpp
- yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec
- https://github.com/jbeder/yaml-cpp
- Versions:
  - 0.7.0-GCCcore-11.3.0
  - 0.8.0-GCCcore-13.2.0
  * 0.8.0-GCCcore-13.3.0
zlib
- zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
- https://www.zlib.net/
- Versions:
  - 1.2.11-GCCcore-9.3.0
  - 1.2.11-GCCcore-10.2.0
  - 1.2.11-GCCcore-10.3.0
  - 1.2.11-GCCcore-11.2.0
  - 1.2.11
  - 1.2.12-GCCcore-11.3.0
  - 1.2.12-GCCcore-12.2.0
  - 1.2.12
  - 1.2.13-GCCcore-12.3.0
  - 1.2.13-GCCcore-13.2.0
  - 1.2.13
  - 1.3.1-GCCcore-13.3.0
  - 1.3.1-GCCcore-14.1.0
  - 1.3.1-GCCcore-14.2.0
  - 1.3.1-GCCcore-14.3.0
  * 1.3.1
zstd
- Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
- https://facebook.github.io/zstd
- Versions:
  - 1.4.4-GCCcore-9.3.0
  - 1.4.5-GCCcore-10.2.0
  - 1.4.9-GCCcore-10.3.0
  - 1.5.0-GCCcore-11.2.0
  - 1.5.2-GCCcore-11.3.0
  - 1.5.2-GCCcore-12.2.0
  - 1.5.5-GCCcore-12.3.0
  - 1.5.5-GCCcore-13.2.0
  - 1.5.6-GCCcore-13.3.0
  * 1.5.6-GCCcore-14.2.0

ACTC

ANSYS

ATK

Abseil

Armadillo

Arrow

Autoconf

Automake

Autotools

BEDTools

BLAST+

BLIS

BRiAl

BamTools

Bazel

BeautifulSoup

Biopython

Bison

Blender

Block

Boost

Boost.MPI

Boost.Python

Bottleneck

Bowtie2

Brotli

Brotli-python

Brunsli

CESM-deps

CFITSIO

CGAL

CMake

COMSOL

CPPE

CUDA

CUDAcore

CUDD

CUnit

CVXOPT

Cartopy

Catch2

CheMPS2

Check

Clang

CoCoALib

Cython

DBus

DendroPy

Dice

Doxygen

E-ANTIC

ECL

ELPA

ESMF

EasyBuild

Eigen

Emacs

FFLAS-FFPACK

FFTW

FFTW.MPI

FFmpeg

FIRESTARTER

FLAC

FLINT

FLTK

FastQC

FastTree

Fiona

FlexiBLAS

FreeXL

FriBidi

GCC

GCCcore

GConf

GDAL

GDRCopy

GEOS

GL2PS

GLPK

GLib

GMP

GMP-ECM

GObject-Introspection

GRASS

GROMACS

GSL

GST-plugins-base

GStreamer

GTK2

GTK3

Gdk-Pixbuf

Ghostscript

Givaro

GnuTLS

Graphene

GraphicsMagick

Guile

Gurobi

HDF

HDF5

HMMER

HPL

HTSlib

HarfBuzz

ICU

IJulia

IML

IPython

IRkernel

ISA-L

ImageJ

ImageMagick

Imath

JUnit

Jansson

JasPer

Java

JsonCpp

Julia

JupyterLab

KaHIP

LAME

LAMMPS

LERC

LLVM

LMDB

LZO

LibSoup

LibTIFF

LinBox

LittleCMS

Lua

MAFFT

MATLAB

MDI

METIS

MPC

MPFI

MPFR

MPICH

Mako

MariaDB-connector-c

Markdown

MathWorksServiceHost

Maven

Maxent

Mesa

Meson

Miniconda3

Miniforge3

Mono

NASM

NCCL

NECI

NLopt

NSPR

NSS

NTL

Ninja

Normaliz

OCaml

ORCA

OSU-Micro-Benchmarks

Octave

Olex2

OpenBLAS

OpenEXR

OpenFOAM

OpenJPEG

OpenMPI

OpenPGM

OpenRefine

OpenSSL

PARI-GP

PCRE

PCRE2

PDAL

PLUMED

PLY

PMIx

POV-Ray

PROJ

PRRTE

Pandoc

Pango

ParaView

Parsl

Perl

Perl-bundle-CPAN

PhyML

Pillow

Pillow-SIMD

PnetCDF

PostgreSQL

PyBerny

PyCharm

PyCheMPS2

PyHMMER

PyQt-builder

PyQt5

PySCF

PyTorch

PyYAML

PyZMQ

Pysam

Python

Python-Data-Science

Python-bundle-PyPI

QCA

QGIS

QIIME2

QScintilla

Qhull

Qt5

Qt5Webkit

Qt6

QtKeychain

Quandl

QuantumESPRESSO

Qwt

R-bundle-Bioconductor

R-bundle-CRAN

RAxML

RAxML-NG

RE2

RStudio-Server

RapidJSON

Ruby

Rust

SAMtools

SCOTCH

SCons

SDL2

SIP

SOCI

SQLite

SRA-Toolkit

SUNDIALS

SWIG

SYMMETRICA

Sagemath

ScaFaCoS

ScaLAPACK

SciPy-bundle

Seaborn

Shapely

SharedMeatAxe

Siesta

Simple-DFTD3

Singular

Spark

Stacks

Structure

SuiteSparse

SymEngine

SymEngine-python

Szip

TOML-Fortran

Tcl

TensorFlow

Tkinter

Trimmomatic

TurboVNC

UCC

UCX

UCX-CUDA

UDUNITS

UnZip

UniFrac

VMD

VSCode

VSEARCH

VTK

VirtualGL

Voro++

Wayland

Waylandpp

WebKitGTK+

X11

XCFun

XML-LibXML

XML-Parser

Xerces-C++

Xvfb

Yasm

ZeroMQ

Zip

alsa-lib

ant

archspec

arpack-ng

arrow-R

assimp

at-spi2-atk

at-spi2-core

attr

attrdict3

bcrypt

binutils

biom-format

bliss

bokeh

bwidget

bzip2

c-ares

cURL

cairo

ccache

cddlib

cffi

cliquer

code-server

coverage

coxeter

cpio

cppy

cppyy

cryptography

cuDNN

cuSPARSELt

cuTENSOR

cutadapt

cysignals

dbus-glib

dill

double-conversion

draco

eclib

elfutils

enchant-2

exiv2

expat

expecttest

ffnvcodec

file

flatbuffers

flatbuffers-python

flex

flit

flook

fmt

fontconfig

fonttools

foss

fosscuda

fplll

fpylll

freeglut

freetype

gap

gawk

gcccuda

gengetopt

gettext

gfbf

gffutils

giac

giflib

git

git-lfs

glew

glib-networking

gmpy2

gnupg-bundle

gnuplot

gompi

gompic

googletest

gperf

graphite2

groff

grpcio

gzip

h5py

hatch-jupyter-builder

hatchling

help2man

hevea

hiredis

hunspell

hwloc

hypothesis

igraph

iimpi

imkl

imkl-FFTW

impi

inih

intel

intel-compilers

intltool

jbigkit

jedi

jemalloc

json-c

json-fortran

jupyter-c-kernel

jupyter-server

kim-api

lcalc

libGLU

libGridXC

libPSML

libaec

libaio

libarchive

libavif

libbraiding

libcerf

libcint

libdeflate

libdrm

libepoxy

libev

libevent

libexif

libfabric

libfdf

libffi

libgcrypt

libgd

libgdiplus

libgeotiff

libgit2

libglvnd

libgpg-error

libhomfly

libiconv

libidn2

libjpeg-turbo

libmatheval

libnsl

libogg

libopus

libpciaccess

libpng

libpsl

libreadline

librttopo

libsndfile

libsodium

libspatialindex

libspatialite

libtasn1

libtirpc

libtool

libunistring

libunwind

libvorbis

libwebp

libwpe

libxc

libxml2

libxslt

libyaml

libzip

lrcalc

lrslib

lxml

lz4

m4ri

m4rie

magma

make

makeinfo

matplotlib

maturin

mcqd

mctc-lib

meson-python

minizip

ml_dtypes

molmod

mpi4py

mstore

muparserx

nauty

ncbi-vdb

ncurses

netCDF

netCDF-C++4

netCDF-Fortran

nettle

networkx

nghttp2

nghttp3

ngtcp2

nlohmann_json

nodejs

nose3

nsync

numactl

numba

numexpr

numpy

ocamlbuild

optree

p11-kit

paramiko

patchelf

pigz

pixman

pkg-config

pkgconf

pkgconfig

planarity

pocl

poetry

poppler

primecount

primecountpy

protobuf

protobuf-python

psutil

psycopg2

pugixml

pybedtools

pybind11

pyfaidx

pyproj

pytest

pytest-flakefinder

pytest-rerunfailures

pytest-shard

pytest-xdist

python-isal

qrupdate

quarto

rankwidth

re2c

retworkx

rgdal

rstudio-apptainer

ruamel.yaml

scikit-bio

scikit-build

scikit-build-core

scikit-learn

scikit-plot

setuptools-rust

sirocco

snappy

spdlog

statsmodels

sympy

tbb

tblis

tdlib

tensorboard

tensorboardX

test-drive

texinfo

texlive

tlparse

tornado

tqdm

typing-extensions

umap-learn

unifdef

unittest-xml-reporting

utf8proc

util-linux

virtualenv

wget

wpebackend-fdo

wrapt

wxPython

wxWidgets

x264

x265

xmlf90

xorg-macros

xprop

xxd

yaff

yaml-cpp

zlib

zstd